BioContainers/multi-package-containers (opens in new tab)

name: Auto-merge bot PRs

on:
  pull_request_target:
    types: [opened, synchronize, reopened]

jobs:
  automerge:
    runs-on: ubuntu-latest
    if: github.event.pull_request.user.login == 'dockerhub-toolshed'
    steps:
      - uses: actions/create-github-app-token@v3
        id: app-token
        with:
          app-id: 3114451
          private-key: ${{ secrets.APP_PRIVATE_KEY }}

      - name: Enable Pull Request Automerge
        run: gh pr merge --merge --auto --repo "${{ github.repository }}" "${{ github.event.pull_request.number }}"
        env:
          GH_TOKEN: ${{ steps.app-token.outputs.token }}

name: Build image
on: [push, pull_request]
env:
  MULLED_NAMESPACE: biocontainers
  MULLED_TOOL_UTIL_SOURCE: git+https://github.com/bgruening/galaxy.git@mulled_quay_enhancements#subdirectory=packages/tool_util
jobs:
  build-and-test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: true
      matrix:
        python-version: [3.9]
    steps:
    - uses: actions/checkout@v4
    - uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}
    - uses: astral-sh/setup-uv@v7
    - run: docker --version
    - run: docker info
    - name: Build images
      run: |
        uv run --with "$MULLED_TOOL_UTIL_SOURCE" python -m galaxy.tool_util.deps.mulled.mulled_build_files --check-published --singularity --namespace $MULLED_NAMESPACE build-and-test ./combinations --verbose
    - name: Upload images (if pushed to master branch)
      if: github.ref == 'refs/heads/master' && github.repository_owner == 'BioContainers'
      env:
        SSH_AUTH_SOCK: /tmp/ssh_agent.sock
        INVOLUCRO_AUTH: "https://${{ secrets.MY_USER }}:${{ secrets.MY_PASSWORD }}@quay.io/v1/?email=${{ secrets.MY_EMAIL }}"
      run: |
         mkdir -p ~/.ssh
         ssh-keyscan -t rsa depot.galaxyproject.org >> ~/.ssh/known_hosts
         ssh-agent -a $SSH_AUTH_SOCK > /dev/null
         ssh-add - <<< "${{ secrets.ORVAL_KEY }}"
         uv run --with "$MULLED_TOOL_UTIL_SOURCE" python -m galaxy.tool_util.deps.mulled.mulled_build_files --check-published --namespace $MULLED_NAMESPACE --oauth-token ${{ secrets.QUAY_OAUTH_TOKEN }} push ./combinations
         ls -l singularity_import
         [ "$(ls -A singularity_import)" ] && echo 'uploading Singularity images' && scp singularity_import/*:* singularity@depot.galaxyproject.org:/srv/nginx/depot.galaxyproject.org/root/singularity/