galaxyproject/dockstore-galaxy-interface (opens in new tab)

# this job checks that we haven't tampered with any (more) generated code and should be updated when updating the version of gxformat
name: Check bindings

on: push

jobs:
  build:

    runs-on: ubuntu-22.04

    steps:
    - name: checkout this repo
      uses: actions/checkout@v3
      with:
        path: dockstore-galaxy-interface
    - name: checkout gxformat2 repo
      uses: actions/checkout@v3
      with:
        ref: 0.15.0
        repository: galaxyproject/gxformat2
        path: gxformat2
    - name: Set up JDK 17
      uses: actions/setup-java@v3
      with:
        java-version: '17'
        distribution: 'temurin'
        cache: maven
    - name: Run parser update
      working-directory: dockstore-galaxy-interface
      run: bash update_parser.sh
    - name: git diff
      run: git diff
      working-directory: dockstore-galaxy-interface
    - name: Build with Maven
      run: mvn -B clean install
      working-directory: dockstore-galaxy-interface
    

# For most projects, this workflow file will not need changing; you simply need
# to commit it to your repository.
#
# You may wish to alter this file to override the set of languages analyzed,
# or to provide custom queries or build logic.
#
# ******** NOTE ********
# We have attempted to detect the languages in your repository. Please check
# the `language` matrix defined below to confirm you have the correct set of
# supported CodeQL languages.
#
name: "CodeQL"

on:
  push:
    branches: [ "develop", "master", "hotfix/*", "release/*", "feature/**" ]
  pull_request:
    # The branches below must be a subset of the branches above
    branches: [ "develop", "master", "hotfix/*", "release/*", "feature/**" ]

jobs:
  analyze:
    name: Analyze
    runs-on: ubuntu-22.04
    permissions:
      actions: read
      contents: read
      security-events: write

    strategy:
      fail-fast: false
      matrix:
        language: [ 'java' ]
        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
        # Use only 'java' to analyze code written in Java, Kotlin or both
        # Use only 'javascript' to analyze code written in JavaScript, TypeScript or both
        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support

    steps:
    - name: Checkout repository
      uses: actions/checkout@v3

    - name: Set up JDK 17
      uses: actions/setup-java@v3
      with:
        java-version: '17'
        distribution: 'temurin'
        cache: maven

    # Initializes the CodeQL tools for scanning.
    - name: Initialize CodeQL
      uses: github/codeql-action/init@v2
      with:
        languages: ${{ matrix.language }}
        # If you wish to specify custom queries, you can do so here or in a config file.
        # By default, queries listed here will override any specified in a config file.
        # Prefix the list here with "+" to use these queries and those in the config file.

        # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
        # queries: security-extended,security-and-quality


    # Autobuild attempts to build any compiled languages  (C/C++, C#, Go, or Java).
    # If this step fails, then you should remove it and run the build manually (see below)
    - name: Autobuild
      uses: github/codeql-action/autobuild@v2

    # ℹ️ Command-line programs to run using the OS shell.
    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun

    #   If the Autobuild fails above, remove it and uncomment the following three lines.
    #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.

    # - run: |
    #   echo "Run, Build Application using script"
    #   ./location_of_script_within_repo/buildscript.sh

    - name: Perform CodeQL Analysis
      uses: github/codeql-action/analyze@v2
      with:
        category: "/language:${{matrix.language}}"

name: Java CI

on: [push]

jobs:
  build:

    runs-on: ubuntu-22.04

    steps:
    - uses: actions/checkout@v3
    - name: Set up JDK 17
      uses: actions/setup-java@v3
      with:
        java-version: '17'
        distribution: 'temurin'
        cache: maven
    - name: Build with Maven
      run: mvn -B package --file pom.xml