Jekyll2026-02-11T02:46:10+01:00https://galaxyproject.eu/feed.xmlGalaxy EuropeThe European Galaxy InstanceUseGalaxy.eu Tool Updates for 2026-02-082026-02-08T00:00:00+01:002026-02-08T00:00:00+01:00https://galaxyproject.eu/posts/2026/02/08/tool-updateOn 2026-02-08, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #551

Species abundance

Quality Control

Metabolomics

QIIME 2

ChemicalToolBox

RNA Analysis

Graph/Display Data

FASTA/FASTQ

Mapping

Peak Calling

Epigenetics

Phenotype Association

Annotation

Variant Calling

Collection Operations

Imaging

Evolution

HiCExplorer

Metagenomic Analysis

Nanopore

Proteomics

None

hca_sc_scanpy_tools

]]>UseGalaxy.eu Tool Updates for 2026-02-012026-02-01T00:00:00+01:002026-02-01T00:00:00+01:00https://galaxyproject.eu/posts/2026/02/01/tool-updateOn 2026-02-01, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #550

Data and Metadata Management

Imaging

QIIME 2

  • qiime2__alignment__mafft was updated to e7746c84c60d
  • qiime2__alignment__mafft_add was updated to 3c8af46b66c9
  • qiime2__alignment__mask was updated to 4facd8fa09a6
  • qiime2__composition__add_pseudocount was updated to 8cc448683483
  • qiime2__composition__ancom was updated to 6114b42d3e92
  • qiime2__composition__ancombc was updated to 46a04223b59c
  • qiime2__composition__tabulate was updated to 397af24f4bb3
  • qiime2__cutadapt__demux_paired was updated to 691d22c2a628
  • qiime2__cutadapt__demux_single was updated to 37b9ab6237b3
  • qiime2__cutadapt__trim_paired was updated to 7a93cef64ba7
  • qiime2__cutadapt__trim_single was updated to 5a9171c06d72
  • qiime2__dada2__denoise_ccs was updated to c0de44a3c93f
  • qiime2__dada2__denoise_paired was updated to 569b33f54ed0
  • qiime2__dada2__denoise_pyro was updated to 72a77c0fc44b
  • qiime2__dada2__denoise_single was updated to e8bc729e0118
  • qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
  • qiime2__deblur__denoise_16S was updated to b883cbea5623
  • qiime2__deblur__denoise_other was updated to caba6b5c3f31
  • qiime2__deblur__visualize_stats was updated to 3459b9ebf363
  • qiime2__demux__emp_paired was updated to 14b64f3aecc0
  • qiime2__demux__emp_single was updated to ab32ff3e8409
  • qiime2__demux__filter_samples was updated to fa6fb7241903
  • qiime2__demux__subsample_paired was updated to d6f3e9386701
  • qiime2__demux__subsample_single was updated to b89c3e29f757
  • qiime2__demux__summarize was updated to 9d4d7f37ba01
  • qiime2__diversity__adonis was updated to edd438e4c215
  • qiime2__diversity__alpha was updated to 81c2b920e481
  • qiime2__diversity__alpha_correlation was updated to 534ac3cdb7ef
  • qiime2__diversity__alpha_group_significance was updated to 6698547705c9
  • qiime2__diversity__alpha_phylogenetic was updated to ae8ad38c91f3
  • qiime2__diversity__alpha_rarefaction was updated to 3a8c645430a2
  • qiime2__diversity__beta was updated to 2bba80b91449
  • qiime2__diversity__beta_correlation was updated to 2cce6fd3c5c5
  • qiime2__diversity__beta_group_significance was updated to 8f112ef712c3
  • qiime2__diversity__beta_phylogenetic was updated to 94580f6bb227
  • qiime2__diversity__beta_rarefaction was updated to e49e8e71778a
  • qiime2__diversity__bioenv was updated to 229b1223d573
  • qiime2__diversity__core_metrics was updated to d491f7ce7eeb
  • qiime2__diversity__core_metrics_phylogenetic was updated to 4fe98252a16f
  • qiime2__diversity__filter_alpha_diversity was updated to c2b3f86034a1
  • qiime2__diversity__filter_distance_matrix was updated to f26b195f8717
  • qiime2__diversity__mantel was updated to eb9651cfc29f
  • qiime2__diversity__pcoa was updated to 105648bc06de
  • qiime2__diversity__pcoa_biplot was updated to 606be038dfca
  • qiime2__diversity__procrustes_analysis was updated to be491a2fddd9
  • qiime2__diversity__tsne was updated to 2d64681c0e6c
  • qiime2__diversity__umap was updated to f302618bba77
  • qiime2__diversity_lib__alpha_passthrough was updated to 9cdb84be991a
  • qiime2__diversity_lib__beta_passthrough was updated to a592ae004989
  • qiime2__diversity_lib__beta_phylogenetic_meta_passthrough was updated to c692f88fd6ea
  • qiime2__diversity_lib__beta_phylogenetic_passthrough was updated to 954538b42388
  • qiime2__diversity_lib__bray_curtis was updated to 464407f09f5b
  • qiime2__diversity_lib__faith_pd was updated to 189a5010a63b
  • qiime2__diversity_lib__jaccard was updated to 4cc70acceb6a
  • qiime2__diversity_lib__observed_features was updated to b63011c31bdf
  • qiime2__diversity_lib__pielou_evenness was updated to 07d9546f3c0f
  • qiime2__diversity_lib__shannon_entropy was updated to 259778bc2545
  • qiime2__diversity_lib__unweighted_unifrac was updated to 2f6249bb5bb3
  • qiime2__diversity_lib__weighted_unifrac was updated to f6f101a1e428
  • qiime2__emperor__biplot was updated to 953ddf320293
  • qiime2__emperor__plot was updated to 5142eb50d0f1
  • qiime2__emperor__procrustes_plot was updated to ccc4efc2be20
  • qiime2__feature_classifier__blast was updated to a35a5a93a0de
  • qiime2__feature_classifier__classify_consensus_blast was updated to ea8cf19a6b4e
  • qiime2__feature_classifier__classify_consensus_vsearch was updated to 30db102ee928
  • qiime2__feature_classifier__classify_hybrid_vsearch_sklearn was updated to b57e9ec6c7cb
  • qiime2__feature_classifier__classify_sklearn was updated to 6131ad924c9d
  • qiime2__feature_classifier__extract_reads was updated to 59cc917e6c43
  • qiime2__feature_classifier__find_consensus_annotation was updated to f1ec8a01bc25
  • qiime2__feature_classifier__fit_classifier_naive_bayes was updated to 7f7768a05405
  • qiime2__feature_classifier__fit_classifier_sklearn was updated to 8f538ba984d6
  • qiime2__feature_classifier__vsearch_global was updated to 22e1ea2e7868
  • qiime2__feature_table__core_features was updated to 99489fb3ebae
  • qiime2__feature_table__filter_features was updated to 80aaf563ad41
  • qiime2__feature_table__filter_features_conditionally was updated to 8cb6512f92c2
  • qiime2__feature_table__filter_samples was updated to 7f1f03544164
  • qiime2__feature_table__filter_seqs was updated to fec591c0a8b2
  • qiime2__feature_table__group was updated to 9cdbe2131ba2
  • qiime2__feature_table__heatmap was updated to 0235f6ee6b00
  • qiime2__feature_table__merge was updated to bf3727f84b09
  • qiime2__feature_table__merge_seqs was updated to e881c053d617
  • qiime2__feature_table__merge_taxa was updated to ebd22a31a6ca
  • qiime2__feature_table__presence_absence was updated to 88e8fe4e5593
  • qiime2__feature_table__rarefy was updated to c4c298cf86ff
  • qiime2__feature_table__relative_frequency was updated to bee177d272d6
  • qiime2__feature_table__rename_ids was updated to 4e756c17f673
  • qiime2__feature_table__summarize was updated to 41e9af5ca46b
  • qiime2__feature_table__tabulate_seqs was updated to f85a59f6a6dc
  • qiime2__feature_table__transpose was updated to add1ecd65761
  • qiime2__fragment_insertion__classify_otus_experimental was updated to df69ad7bd72e
  • qiime2__fragment_insertion__filter_features was updated to 9f4bb27d311e
  • qiime2__fragment_insertion__sepp was updated to b102c0399031
  • qiime2__longitudinal__anova was updated to ff77cadbffd4
  • qiime2__longitudinal__feature_volatility was updated to 5a619fceee59
  • qiime2__longitudinal__first_differences was updated to 005546da41b3
  • qiime2__longitudinal__first_distances was updated to 27d6ec9e6cf7
  • qiime2__longitudinal__linear_mixed_effects was updated to dfa1b9145676
  • qiime2__longitudinal__maturity_index was updated to de136358be79
  • qiime2__longitudinal__nmit was updated to 7df235e8ffee
  • qiime2__longitudinal__pairwise_differences was updated to 2a35d9c0b3d7
  • qiime2__longitudinal__pairwise_distances was updated to 3ea4b3a7cd98
  • qiime2__longitudinal__plot_feature_volatility was updated to 01cff64c80d4
  • qiime2__longitudinal__volatility was updated to 9bd79ac5d5a9
  • qiime2__metadata__distance_matrix was updated to 489568308331
  • qiime2__metadata__shuffle_groups was updated to c40e092b597b
  • qiime2__metadata__tabulate was updated to 92bb3663bb96
  • qiime2__phylogeny__align_to_tree_mafft_fasttree was updated to 1eae9d13a91e
  • qiime2__phylogeny__align_to_tree_mafft_iqtree was updated to 23d03d969e3f
  • qiime2__phylogeny__align_to_tree_mafft_raxml was updated to dd2f2e2a78dd
  • qiime2__phylogeny__fasttree was updated to f55b87df371b
  • qiime2__phylogeny__filter_table was updated to 1483617982b9
  • qiime2__phylogeny__filter_tree was updated to 2a19e706b950
  • qiime2__phylogeny__iqtree was updated to 115edc5f53e7
  • qiime2__phylogeny__iqtree_ultrafast_bootstrap was updated to 27eca41291df
  • qiime2__phylogeny__midpoint_root was updated to dec5adad44b4
  • qiime2__phylogeny__raxml was updated to f5f46f8e90f5
  • qiime2__phylogeny__raxml_rapid_bootstrap was updated to b75fbaa44819
  • qiime2__phylogeny__robinson_foulds was updated to b2f479ae617f
  • qiime2__quality_control__bowtie2_build was updated to d03a538e7f15
  • qiime2__quality_control__evaluate_composition was updated to c3428af35512
  • qiime2__quality_control__evaluate_seqs was updated to b219a5f076a9
  • qiime2__quality_control__evaluate_taxonomy was updated to 77d8e3a550c9
  • qiime2__quality_control__exclude_seqs was updated to 03c51a04d74c
  • qiime2__quality_control__filter_reads was updated to afa26637a1b8
  • qiime2__quality_filter__q_score was updated to c893dd688543
  • qiime2__rescript__get_bv_brc_genome_features was updated to 35d2552c4318
  • qiime2__rescript__get_bv_brc_genomes was updated to 40b49b7051de
  • qiime2__rescript__get_bv_brc_metadata was updated to 1b1d508e0792
  • qiime2__sample_classifier__classify_samples was updated to 038d839c691f
  • qiime2__sample_classifier__classify_samples_from_dist was updated to a4fd6a2a6e80
  • qiime2__sample_classifier__classify_samples_ncv was updated to 5d64e3c232ca
  • qiime2__sample_classifier__confusion_matrix was updated to 350ccc095dab
  • qiime2__sample_classifier__fit_classifier was updated to 5d635c20fa90
  • qiime2__sample_classifier__fit_regressor was updated to 767dcee7c5c3
  • qiime2__sample_classifier__heatmap was updated to 9d8119a198b0
  • qiime2__sample_classifier__metatable was updated to 9e75d09f0dd7
  • qiime2__sample_classifier__predict_classification was updated to 87a9833db662
  • qiime2__sample_classifier__predict_regression was updated to 87023c8f07e2
  • qiime2__sample_classifier__regress_samples was updated to f1c047f2736b
  • qiime2__sample_classifier__regress_samples_ncv was updated to b6363d2b0758
  • qiime2__sample_classifier__scatterplot was updated to 65ad7be12802
  • qiime2__sample_classifier__split_table was updated to e14a0ee1d000
  • qiime2__sample_classifier__summarize was updated to b85f0fe49b56
  • qiime2__stats__alpha_group_significance was updated to e2a1cab0c134
  • qiime2__stats__collate_stats was updated to 13b4fb6c0d8c
  • qiime2__stats__facet_across was updated to 971966a01e22
  • qiime2__stats__facet_within was updated to 838be8534dce
  • qiime2__stats__mann_whitney_u_facet was updated to 1254e2fcdc63
  • qiime2__stats__plot_rainclouds was updated to 02a662eeb51e
  • qiime2__stats__prep_alpha_distribution was updated to 69bbf46edd90
  • qiime2__stats__wilcoxon_srt was updated to 3eeb66ec76de
  • qiime2__stats__wilcoxon_srt_facet was updated to b3979f9f3127
  • qiime2__taxa__barplot was updated to 3fa5e4d759dc
  • qiime2__taxa__collapse was updated to 23d79b56bb5c
  • qiime2__taxa__filter_seqs was updated to 5f0c935ced92
  • qiime2__taxa__filter_table was updated to baef54e1b523
  • qiime2__vizard__boxplot was updated to 9914bc7639bf
  • qiime2__vizard__heatmap was updated to f1c89e50a57b
  • qiime2__vizard__lineplot was updated to 5c88027a9803
  • qiime2__vizard__scatterplot_2d was updated to 17fe765b36d3
  • qiime2__vsearch__cluster_features_closed_reference was updated to dd4ab267d0b1
  • qiime2__vsearch__cluster_features_de_novo was updated to 56261d83a803
  • qiime2__vsearch__cluster_features_open_reference was updated to 83c4484cf95e
  • qiime2__vsearch__dereplicate_sequences was updated to 94ea97eb8d17
  • qiime2__vsearch__fastq_stats was updated to 78c22686b7b7
  • qiime2__vsearch__merge_pairs was updated to 25550e1dee74
  • qiime2__vsearch__uchime_denovo was updated to b46134de0e4e
  • qiime2__vsearch__uchime_ref was updated to 1b0e65fdda63
  • qiime2_core__tools__export was updated to b6e4d26e4e7a
  • qiime2_core__tools__import was updated to 95475922280e
  • qiime2_core__tools__import_fastq was updated to 87623807fced

Assembly

FASTA/FASTQ

Metagenomic Analysis

None

  • data_manager_diamond_database_builder was updated to 4a08b7b76b78
]]>UseGalaxy.eu Tool Updates for 2026-01-252026-01-25T00:00:00+01:002026-01-25T00:00:00+01:00https://galaxyproject.eu/posts/2026/01/25/tool-updateOn 2026-01-25, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #549

GIS Data Handling

Get Data

  • iabiodiv_smartbiodiv_med_environ was updated to 3e201bc0eea3

QIIME 2

Proteomics

FASTA/FASTQ

Imaging

Annotation

Convert Formats

Mapping

Metagenomic Analysis

Phylogenetics

Virology

None

  • data_manager_diamond_database_builder was updated to 4a08b7b76b78
]]>UseGalaxy.eu Tool Updates for 2026-01-182026-01-18T00:00:00+01:002026-01-18T00:00:00+01:00https://galaxyproject.eu/posts/2026/01/18/tool-updateOn 2026-01-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #548

Text Manipulation

Quality Control

Computer vision

  • wildlife_megadetector_huggingface was updated to 06e5a410db96

QIIME 2

Proteomics

GIS Data Handling

Graph/Display Data

Imaging

Get Data

Metagenomic Analysis

Mothur

None

  • data_manager_diamond_database_builder was updated to 4a08b7b76b78

Variant Calling

]]>UseGalaxy.eu Tool Updates for 2026-01-112026-01-11T00:00:00+01:002026-01-11T00:00:00+01:00https://galaxyproject.eu/posts/2026/01/11/tool-updateOn 2026-01-11, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #547

QIIME 2

RNA Analysis

GIS Data Handling

Imaging

Metagenomic Analysis

Annotation

None

  • data_manager_build_coreprofiler was updated to 13c348da56a8
  • data_manager_diamond_database_builder was updated to 4a08b7b76b78

Gemini

]]>UseGalaxy.eu Tool Updates for 2026-01-042026-01-04T00:00:00+01:002026-01-04T00:00:00+01:00https://galaxyproject.eu/posts/2026/01/04/tool-updateOn 2026-01-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #546

QIIME 2

Imaging

None

  • data_manager_diamond_database_builder was updated to 4a08b7b76b78
]]>UseGalaxy.eu Tool Updates for 2025-12-282025-12-28T00:00:00+01:002025-12-28T00:00:00+01:00https://galaxyproject.eu/posts/2025/12/28/tool-updateOn 2025-12-28, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #545

QIIME 2

Imaging

Get Data

Metagenomic Analysis

None

  • data_manager_diamond_database_builder was updated to 4a08b7b76b78
]]>UseGalaxy.eu Tool Updates for 2025-12-212025-12-21T00:00:00+01:002025-12-21T00:00:00+01:00https://galaxyproject.eu/posts/2025/12/21/tool-updateOn 2025-12-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #544

QIIME 2

RNA Analysis

Phenotype Association

Convert Formats

Annotation

Imaging

Collection Operations

None

  • data_manager_build_coreprofiler was updated to 45c8bfaab608
  • data_manager_diamond_database_builder was updated to 4a08b7b76b78

Assembly

Mapping

Metagenomic Analysis

]]>UseGalaxy.eu Tool Updates for 2025-12-142025-12-14T00:00:00+01:002025-12-14T00:00:00+01:00https://galaxyproject.eu/posts/2025/12/14/tool-updateOn 2025-12-14, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #543

Get Data

Metabolomics

ChemicalToolBox

QIIME 2

Proteomics

Convert Formats

Imaging

Annotation

None

Metagenomic Analysis

NCBI Blast

Nanopore

Single-cell

]]>UseGalaxy.eu Tool Updates for 2025-12-072025-12-07T00:00:00+01:002025-12-07T00:00:00+01:00https://galaxyproject.eu/posts/2025/12/07/tool-updateOn 2025-12-07, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #542

Annotation

Graph/Display Data

QIIME 2

Variant Calling

Convert Formats

Assembly

FASTA/FASTQ

Multiple Alignments

Nanopore

Single-cell

None

  • data_manager_diamond_database_builder was updated to 4a08b7b76b78
]]>