On 2021-12-17, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #303
ChemicalToolBox
- ctb_rdkit_descriptors was updated to 0993ac4f4a23
- ambertools_antechamber was updated to c280abd461a6
- mmpbsa_mmgbsa was updated to 12caa50c0d5f
Proteomics
- openms_openpepxl was updated to 40cc19c0dbd6
- openms_openpepxl was updated to fc36cfd19834
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to 147aaac03456
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
Metagenomic Analysis
- megan_blast2lca was updated to a80281b0172e
- megan_blast2rma was updated to d326b943f5e2
- megan_sam2rma was updated to 4f0a8e401e2e
Annotation
- repeatmodeler was updated to 41bfbaf3c959
- gff_to_prot was updated to 07d7991bf205
- homer_annotatepeaks was updated to 35dc2f57d755
- homer_findmotifsgenome was updated to a8f207b43f64
- homer_gtf_to_annotations was updated to 396cf2c12173
- homer_gtf_to_annotations was updated to 8ebb6520eef4
- homer_scanmotifgenomewide was updated to db456c398880
Single-cell
- raceid_clustering was updated to c4f39bf4a068
- raceid_filtnormconf was updated to d45f092caf24
- raceid_inspectclusters was updated to be4646256624
- raceid_inspecttrajectory was updated to 3478133d0f6f
- raceid_trajectory was updated to e93b008c637a
Variant Calling
- freebayes was updated to 04fa42777df9
- vcfcheck was updated to aa8e8c96ca06
- bbtools_callvariants was updated to b955346ef41e
- plink was updated to 16d22eee0fe3
- seqwish was updated to 36dc42da5687
- varscan_copynumber was updated to 192bd5b78300
- varscan_copynumber was updated to 9f8dbbbc0267
- varscan_copynumber was updated to c24910ad5441
- varscan_copynumber was updated to e814a042315f
- varscan_mpileup was updated to 45288fb1f3f5
- varscan_mpileup was updated to 7c5e867820cf
- varscan_mpileup was updated to d7e6c347538d
- varscan_mpileup was updated to db94eadb92c1
- varscan_somatic was updated to cf8ffc79db67
- vcfanno was updated to cdcaa40e5e45
Convert Formats
- crossmap_bam was updated to e13f565068d6
- genebed_maf_to_fasta was updated to e25ee6bac872
Evolution
- iqtree was updated to 9b892d7f82cc
Motif Tools
- meme_chip was updated to cc100e0f61f4
Assembly
- raven was updated to f11b994b7eb2
- trycycler_cluster was updated to 505a9833ab5d
- trycycler_consensus was updated to 43af166bc01e
- trycycler_partition was updated to b23249f81bc4
- trycycler_reconcile_msa was updated to 59bd28f6265d
- trycycler_subsample was updated to 05bd7504fdb2
FASTA/FASTQ
- fastx_clipper was updated to cb1e251cac37
Mapping
- bbtools_bbmap was updated to e0ca2ec4f5d9
- bioext_bealign was updated to a07a2d9ddd42
- bwa_mem2 was updated to b4a22d90cce9
RNA Analysis
- edger was updated to df0c8d0a5992
- limma_voom was updated to 32511f586472
- limma_voom was updated to e827f9aae031
- trinity_align_and_estimate_abundance was updated to 6c20d62180af
- trinity_align_and_estimate_abundance was updated to 893655fa55f9
- trinity_contig_exn50_statistic was updated to 34840e9c79b0
- trinity_contig_exn50_statistic was updated to 62b05e565a45
- trinity_contig_exn50_statistic was updated to b1e9a0355166
- trinity_filter_low_expr_transcripts was updated to 1007cdb58d91
- trinity_filter_low_expr_transcripts was updated to 17101429bf0d
- trinity_filter_low_expr_transcripts was updated to 42c5172815f7
- trinity_super_transcripts was updated to 18a069ea4b96
- trinity_super_transcripts was updated to 29472bde8854
- trinity_super_transcripts was updated to 6f480aee5877
Peak Calling
- ccat was updated to 1a6979fbd544
SAM/BAM
- samtools_calmd was updated to 92ec40abcdcf
- samtools_mpileup was updated to 329deb17a9f7
- samtools_coverage was updated to 90f2dd176d80
Graph/Display Data
- bandage was updated to b9e31c5c01c7
Phylogenetics
- hyphy_annotate was updated to 0cd45491b297
- hyphy_annotate was updated to 68cd2d8e3840
- hyphy_annotate was updated to ec59f7a36a24
- hyphy_annotate was updated to f7810488bd92
- hyphy_cfel was updated to 0990351232c6
- hyphy_cfel was updated to 4d712e32039e
- hyphy_cfel was updated to 643be54bef90
- hyphy_cfel was updated to 7a86c37f66d1
- hyphy_cfel was updated to fcabcc150d21
- hyphy_fel was updated to 09afc9104fc8
- hyphy_fel was updated to 1dc833581081
- hyphy_fel was updated to 2b1c3e81add3
- hyphy_fel was updated to 8c9d8b5af4e4
- hyphy_fel was updated to fc50c4bac0a3
- hyphy_slac was updated to 0c6724c345d9
- hyphy_slac was updated to 5f54f026fbe3
- hyphy_slac was updated to 67d3fc9ae1c3
- hyphy_slac was updated to 82c77ba28d70
- hyphy_slac was updated to c010cbc8ff3a
- hyphy_strike_ambigs was updated to 4bf743518e41
- hyphy_strike_ambigs was updated to 4e3212e05a8f
- hyphy_strike_ambigs was updated to 50554f806e16
- hyphy_strike_ambigs was updated to 650bcc9d3f36
- hyphy_strike_ambigs was updated to 79dc560d8ea3
- hyphy_strike_ambigs was updated to 7b214c69e387
- nextalign was updated to 1c785a6b4d90
- nextalign was updated to 4771f8bc8fa4
- nextclade was updated to 51f5e7505c4b
- nextclade was updated to d34df92e598f
- pangolin was updated to 36912871ccdc
Imaging
- idr_download_by_ids was updated to 80af973c5277
- idr_download_by_ids was updated to 97f70f7ed077
- idr_download_by_ids was updated to f067504aa92a
Apollo
- apollo_create_account was updated to 0929c15c3d70
- apollo_create_or_update was updated to 9e7b8c7185ad
- apollo_delete_features was updated to 02404029ae4c
- apollo_delete_organism was updated to 3b4fe78bbe83
- apollo_export was updated to c3251541cf2b
- apollo_feat_from_gff3 was updated to 12ebb583b8a3
- apollo_fetch_jbrowse was updated to 654af4ba76bc
- apollo_iframe was updated to 29159d9ce6f0
- apollo_list_organism was updated to 78abc724d792
Supported by
