On 2025-03-02, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #503

Annotation

• autobigs was updated to 727e524cda34
• multigsea was updated to e08383c04167
• staramr was updated to d0a2e0a9c853
• mob_suite was updated to 179497074102

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

ChemicalToolBox

• apoc was updated to da07fb6a7c62
• smina was updated to 3c170cc50eeb

Imaging

• bioimage_inference was updated to 000f171afabb
• cp_identify_primary_objects was updated to 52c01fb29b2a

None

• data_manager_build_staramr was updated to 0b367fda55da
• data_manager_diamond_database_builder was updated to 4a08b7b76b78

FASTA/FASTQ

• umi_tools_count was updated to 43bcc103b1e9
• umi_tools_dedup was updated to 6ec3233f30a6
• umi_tools_extract was updated to 158e9e91b9fc
• umi_tools_group was updated to a827e3a209fa
• umi_tools_whitelist was updated to f19dee633d4a

Get Data

• ncbi_datasets was updated to d951c5b0edd1

Mothur

• mothur_cluster_classic was updated to 6ba59950d95c

Nanopore

• clair3 was updated to c9218b9dc7f0

Variant Calling

• artic_minion was updated to 02ea80c89fd1
• artic_minion was updated to 93cfe7df7f8a
• cnv_vcf2json was updated to 2691b8c12947
• cnvkit_access was updated to ee93e2047dc1
• cnvkit_antitarget was updated to f1b016247826
• cnvkit_autobin was updated to 33ceac9ae827
• cnvkit_batch was updated to 80dc747a394d
• cnvkit_breaks was updated to d889cf77ec0d
• cnvkit_call was updated to 79b2add55e02
• cnvkit_coverage was updated to 9410f163f2e7
• cnvkit_diagram was updated to 8f642a41cd94
• cnvkit_export_bed was updated to 944f92089b9a
• cnvkit_export_cdt was updated to 21a1d65e26ba
• cnvkit_export_jtv was updated to 6617cb1fcbcc
• cnvkit_export_nexus_basic was updated to b1e27c68c067
• cnvkit_export_nexus_ogt was updated to 5b8288d21d5e
• cnvkit_export_seg was updated to 40918fee953b
• cnvkit_export_vcf was updated to d50130b48076
• cnvkit_fix was updated to aa3fa1c29ccf
• cnvkit_genemetrics was updated to aafd56f1b0f7
• cnvkit_heatmap was updated to 41a25bd96ec6
• cnvkit_reference was updated to 403825b9349a
• cnvkit_scatter was updated to 64960243c9e1
• cnvkit_segment was updated to bdd0e8e05933
• cnvkit_segmetrics was updated to 046b04fc7284
• cnvkit_sex was updated to 9f300faccb88
• cnvkit_target was updated to 8e75b2d61784
• cnvkit_theta was updated to b9688f52a18f

Phylogenetics

• blast_parser was updated to e14f71c3a70e
• ete was updated to 1e85af7a29c4
• gafa was updated to a6c4483a02be
• gstf_preparation was updated to 4340eef6ec1b
• hcluster_sg was updated to 9b7694333ba8
• hcluster_sg_parser was updated to 02d73e6ca869
• hcluster_sg_parser was updated to 451d2588e14e
• t_coffee was updated to e3507be607eb
• treebest_best was updated to b78b529f66db
• treebest_best was updated to d5105943417d