On 2025-11-23, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #540
Join, Subtract and Group
- datamash_ops was updated to d642efa5cbd7
DNA Metabarcoding
- obi_clean was updated to 12baadec7809
- obi_clean was updated to 816cbd8f4e6e
GIS Data Handling
- aquainfra_ogc_api_processes was updated to 65b149d71d53
- ccds_download_era5_af was updated to 49e08dbd94c5
- cmems_download_ic_bc was updated to 970c8ce618fe
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Get Data
- unipept was updated to 4edfc76f8a29
- fastq_dl was updated to 41635d6d4738
Graph/Display Data
- jbrowse2 was updated to bd903fbbc26e
- volcanoplot was updated to e4790edb4299
Annotation
- abritamr was updated to e17bbe564242
- coreprofiler_allele_calling was updated to 772b4e9f7c9b
- mirmachine was updated to c73e17fc5a77
None
- data_manager_build_coreprofiler was updated to a95177c4d627
- data_manager_dada2 was updated to 0181efacb40a
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
Assembly
- meryl_arithmetic_kmers was updated to ee4f9a0cb72a
- meryl_count_kmers was updated to e893b7452150
- meryl_filter_kmers was updated to 06c0a042a61d
- meryl_groups_kmers was updated to cc8029eca6e9
- meryl_histogram_kmers was updated to fa86bf923473
- meryl_print was updated to 9c3c7a147412
- meryl_trio_mode was updated to 416dff497d49
Convert Formats
- geopandas_table2geojson was updated to 402faa5eab62
- samtools_bam_to_cram was updated to 3a2d8de89c73
FASTA/FASTQ
- fastq_groupmerge was updated to bbc3d29a94e5
Metagenomic Analysis
- ampvis2_alpha_diversity was updated to 2e921a1efd45
- ampvis2_boxplot was updated to 22767c01e0cf
- ampvis2_core was updated to 09604c87987c
- ampvis2_export_fasta was updated to 2d3f9d8d030a
- ampvis2_export_otu was updated to e92cdcc7dee5
- ampvis2_frequency was updated to dfb9413825cc
- ampvis2_heatmap was updated to 7c3248a397fd
- ampvis2_load was updated to 9b3e1acc3ad0
- ampvis2_merge_ampvis2 was updated to c7d03a7b52d6
- ampvis2_mergereplicates was updated to 414355492c32
- ampvis2_octave was updated to 9fa62bb69dc4
- ampvis2_ordinate was updated to dc31a6f9fb2f
- ampvis2_otu_network was updated to 37a617dca128
- ampvis2_rankabundance was updated to e913a155618b
- ampvis2_rarecurve was updated to 7723ef4c9163
- ampvis2_setmetadata was updated to 7f5dd19dc792
- ampvis2_subset_samples was updated to b268ffb0e321
- ampvis2_subset_taxa was updated to 35010c1c2d1b
- ampvis2_timeseries was updated to 4dac39937879
- ampvis2_venn was updated to ed963e5316b7
- binette was updated to 9053a39d7994
- customize_metaphlan_database was updated to 2c8db4bf8834
- extract_metaphlan_database was updated to 1fa07868c0f3
- merge_metaphlan_tables was updated to c3e2a0805600
- metaphlan was updated to 56ff60ec416d
NCBI Blast
- diamond was updated to 0cdcf7e99b62
Nanopore
- chopper was updated to 08a6063d8c7c
Phylogenetics
- pangolin was updated to c12c7d0e067b
SAM/BAM
- samtools_bedcov was updated to cc01c0658f6c
- samtools_calmd was updated to 26a85f18dc69
- samtools_flagstat was updated to a0d8e49a018c
- samtools_idxstats was updated to 13aad5cb9be4
- samtools_mpileup was updated to 0668270db5ba
- samtools_phase was updated to 2f901e9402dd
- samtools_reheader was updated to df41198e970c
- samtools_slice_bam was updated to 32e29dd08b1a
- samtools_sort was updated to 69dca890852c
- samtools_split was updated to 3d9c6d1d0b9c
- samtools_stats was updated to 57934e90e27c
- mosdepth was updated to 2fe966f8532e
- samtools_ampliconclip was updated to 77889ed49dbc
- samtools_consensus was updated to 65edd5a6002e
- samtools_coverage was updated to 5160be5d088f
- samtools_depth was updated to fb6d5ffc365f
- samtools_fastx was updated to 491037bfc0d2
- samtools_fixmate was updated to 68a116f469db
- samtools_markdup was updated to 56fb540810ce
- samtools_merge was updated to c8bc9d08b0e3
- samtools_view was updated to 5ec526530725
RNA Analysis
- cmsearch_deoverlap was updated to 42c5bf8ed1b0
Supported by
