On 2025-06-30, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #520
Climate Analysis
- harmonize_insitu_to_netcdf was updated to 208f69b31088
Statistics
- scipy_sparse was updated to 92e09b827300
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
ChemicalToolBox
- lirasearch was updated to 01f534b33608
- openbabel_structure_distance_finder was updated to 4c9d6b47045c
- gmx_restraints was updated to 25b8272872c8
Metagenomic Analysis
- khmer_partition was updated to b7429b53be2a
Proteomics
- openms_qualitycontrol was updated to 2f08fa7ab72c
Machine Learning
- sklearn_ensemble was updated to af0523c606a7
Single-cell
- vpt_extract was updated to 9b5e8695f027
- vpt_segment was updated to a88a1e78702e
- anndata_manipulate was updated to b03c60f8528f
Annotation
- genenotebook_genenotebook_build was updated to 23effb1dfe1a
- abricate was updated to b734db305578
- deeparg_predict was updated to 07801d7ee81f
- deeparg_short_reads was updated to 854b7c026a7e
Assembly
- pairtools_dedup was updated to 914533f3507e
- pairtools_parse was updated to 2131d908a798
- pairtools_sort was updated to f695bf165247
- pairtools_split was updated to f4b5f58b89bf
- pairtools_stats was updated to 3191d425e302
- pretext_graph was updated to 936a1edffce8
- pretext_map was updated to 0346286a3b0a
Convert Formats
- ucsc_twobittofa was updated to 6e1aa95afa75
FASTA/FASTQ
- fastp was updated to 281054a26e41
- fastplong was updated to 1d34936d4497
Graph/Display Data
- pretext_snapshot was updated to 9ec9c22767c8
Mothur
- mothur_chimera_bellerophon was updated to cf1db89b0fda
- mothur_make_contigs was updated to c3203178c41f
Phylogenetics
- pangolin was updated to 77402759b866
Quality Control
- sequali was updated to abea23542a6b
SAM/BAM
- samtools_bedcov was updated to 09652022e285
- samtools_calmd was updated to 22c2ab33cec9
- samtools_flagstat was updated to 3ed3e1146308
- samtools_idxstats was updated to 5c25c98e2a88
- samtools_mpileup was updated to 7df230bec125
- samtools_reheader was updated to 2899e5b8c52a
- samtools_slice_bam was updated to adc4ed59d82b
- samtools_sort was updated to f2f2650aeade
- samtools_stats was updated to 1ed8ed887035
- samtools_ampliconclip was updated to f20b704ba069
- tasmanian_mismatch was updated to 98f2b5dfdaa9
Variant Calling
- artic_guppyplex was updated to c23737f9714f
- artic_minion was updated to 7021ed347f7e
- ucsc_fatovcf was updated to 98c227b9be71
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
hca_sc_scanpy_tools
- scanpy_run_fdg was updated to 4c38558f0e7c
RNA Analysis
- graphprot_predict_profile was updated to 4ad83aed5c3c
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