On 2025-07-07, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #521
Machine Learning
- flexynesis was updated to 9450286c42ab
- flexynesis_cbioportal_import was updated to 3f7481deaff1
- flexynesis_plot was updated to 07f018886d40
- flexynesis_utils was updated to 35f41ee7ca20
- sklearn_discriminant_classifier was updated to 74fe0dc82c00
- sklearn_numeric_clustering was updated to aeca97d9a214
- whisperx was updated to 01b0fcc50e74
Metabolomics
- isolib was updated to 06f2d0d6d107
- matchms_add_key was updated to 081390a8e739
- matchms_add_key was updated to 1d10d32fa3b3
- matchms_convert was updated to 50836782d36f
- matchms_filtering was updated to a6583110825c
- matchms_fingerprint_similarity was updated to fe9f3cd0b8dd
- matchms_formatter was updated to 604131c54f97
- matchms_metadata_export was updated to 51205379251d
- matchms_metadata_match was updated to c86d265f6f5e
- matchms_metadata_merge was updated to e23c14cee5a9
- matchms_networking was updated to 131baa30af82
- matchms_networking was updated to 7c9599ecc2d3
- matchms_remove_key was updated to 10908b5bb7c8
- matchms_remove_spectra was updated to 6fa0150f6172
- matchms_spectral_similarity was updated to 77d6425daa07
- matchms_split was updated to 6864944b00fd
- matchms_subsetting was updated to 6ac4a790adad
- waveica was updated to 821062fc5782
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
ChemicalToolBox
- gmx_editconf was updated to 067c643b0cc0
- alphafold2 was updated to c62f678e5555
Assembly
- fbqs_integrator was updated to 545d37b03fc7
Gemini
- gemini_pathways was updated to c63b7eefb07a
Proteomics
- openms_rtmodel was updated to a9ece00a3e54
- openms_spectrafilterparentpeakmower was updated to 75492ef0bff5
Graph/Display Data
- ggplot2_point was updated to 3b12bf9b4b87
- ggplot2_violin was updated to 3a270cee1239
- graphlan was updated to 6e8eb0c0d91f
None
- data_manager_deeparg was updated to 4a72de3780aa
- data_manager_deeparg was updated to c5511a9b1442
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
Annotation
- braker3 was updated to bec8f57c9d8e
- tbprofiler was updated to 60a1dad331ec
Convert Formats
- geopandas_table2geojson was updated to fb5081261c10
- ucsc_axtchain was updated to 7e353b95f0b6
- ucsc_chainantirepeat was updated to 9f2d2c96a189
- ucsc_chainnet was updated to 5b65a92be96c
- ucsc_netfilter was updated to 5c3fa42d003f
FASTA/FASTQ
- ucsc_fasplit was updated to 1add611a6018
HiCExplorer
- hicexplorer_hicmergeloops was updated to 25332cfeac05
Metagenomic Analysis
- binette was updated to 15dba9749732
- scoary was updated to 295b25fe8e25
Mothur
- mothur_get_otulabels was updated to fd62ac4a6b84
- mothur_shhh_seqs was updated to 6ee54b761c3c
Phylogenetics
- hyphy_sm19 was updated to a96a307afb40
Operate on Genomic Intervals
- subtract was updated to 0145969324c4
fetch_sequences___alignments
- extract_genomic_dna was updated to e400dcbc60d0
Apollo
- apollo_iframe was updated to 29159d9ce6f0
Supported by
