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Galaxy for Genome Annotation

A platform to annotate, curate, and publish genomic data

From annotation.usegalaxy.eu, you can easily run state-of-the-art workflows to annotate genome sequences, and explore your results with modern visualisations (see below).

You also have access to a self-service Apollo server, offering you a free technical infrastructure to set up in minutes your own project of manual curation of annotation for your favorite genome.

Circos in Galaxy
JBrowse in Galaxy

Have a look at the training material to learn how to use these tools!

These resources have been produced by GGA community who works on a group of projects focused on supporting genome annotation inside Galaxy, in particular:

  • Galaxy tools and workflows
  • Training material
  • Docker images for GMOD applications
  • Python libraries to interact with GMOD applications
  • Apollo tooling and service

Community

Checkout the GGA website for more details, and feel free to chat with us on our Matrix channel.

GGA was also presented at ISMB/ECCB 2019!

Training Resources

Eukaryotic Training

Prokaryotic Training

Our Data Policy

Registered UsersUnregistered UsersFTP DataGDPR Compliance
User data on UseGalaxy.eu (i.e. datasets, histories) will be available as long as they are not deleted by the user. Once marked as deleted the datasets will be permanently removed within 14 days. If the user "purges" the dataset in the Galaxy, it will be removed immediately, permanently. An extended quota can be requested for a limited time period in special cases. Processed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics). If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted. Any user data uploaded to our FTP server should be imported into Galaxy as soon as possible. Data left in FTP folders for more than 3 months, will be deleted. The Galaxy service complies with the EU General Data Protection Regulation (GDPR). You can read more about this on our Terms and Conditions.