On 2019-10-17, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #145

HCA-Single Cell

• retrieve_scxa was updated to cc21614b6693
• scanpy_compute_graph was updated to e7fd6981c0f0
• scanpy_filter_cells was updated to dcfb23758646
• scanpy_filter_genes was updated to 7aebd6265a97
• scanpy_find_cluster was updated to ee181563bae7
• scanpy_find_markers was updated to 71668dd2d47b
• scanpy_find_variable_genes was updated to b089f4a55e6b
• scanpy_normalise_data was updated to e541f264fad2
• scanpy_read_10x was updated to 3faf577f3e40
• scanpy_run_pca was updated to 7798c318e7d7
• scanpy_run_tsne was updated to 2e74fd7b5f45
• scanpy_run_umap was updated to 0ac2f9f2313b
• scanpy_scale_data was updated to 9acb5f068e6b
• ucsc_cell_browser was updated to 679dfd1dd63b

Mapping

• rna_starsolo was updated to c23da6257d6a

Variant Calling

• snpeff was updated to de67e5082c48

RNA Analysis

• alevin was updated to e53f19161c59
• salmon was updated to 7fdb9d1591e2
• salmonquantmerge was updated to 178ebdfe5a7e
• dexseq was updated to 4ca0e679f21e

ChemicalToolBox

• bio3d_rmsf was updated to e838317708a6
• gmx_sim was updated to 1a5960636405

Single-cell

• anndata_export was updated to a9ab1b0a00dd
• anndata_import was updated to a61350ab6563
• anndata_inspect was updated to 05304c5c195d
• anndata_manipulate was updated to 19592ec717ef
• dropletutils was updated to f0de368eabca
• scanpy_cluster_reduce_dimension was updated to 20cfb9f3dded
• scanpy_filter was updated to 6a76b60e05f5
• scanpy_inspect was updated to a755eaa1cc32
• scanpy_normalize was updated to a9f14e2d1655
• scanpy_plot was updated to e4c0f5ee8e17
• scanpy_remove_confounders was updated to a89ee42625ad