On 2019-11-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #158
Statistics
- create_tool_recommendation_model was updated to 12764915e1c5
- create_tool_recommendation_model was updated to 9bf25dbe00ad
- keras_batch_models was updated to 0a7f2b9e1fcb
- keras_batch_models was updated to 7f6079deac6f
- keras_batch_models was updated to ed4d31f47d65
- keras_model_builder was updated to 1f0c955fabc7
- keras_model_builder was updated to 4bd0bd2add7f
- keras_model_builder was updated to 5f39cff2a372
- keras_model_config was updated to 0fd7d8e90e2a
- keras_model_config was updated to bedbda03c573
- keras_model_config was updated to e474e701d58b
- ml_visualization_ex was updated to 09efff9a5765
- ml_visualization_ex was updated to dd13740e8fdc
- ml_visualization_ex was updated to f96efab83b65
- model_prediction was updated to af7ed4d45619
- model_prediction was updated to ce00f1cccb03
- model_prediction was updated to fb1fa391189e
- scipy_sparse was updated to 102c8bae2e9c
- scipy_sparse was updated to 1658dff33c46
- scipy_sparse was updated to 2a32d1d9c8da
- scipy_sparse was updated to 648b81bca7c5
- scipy_sparse was updated to b9ed7b774ba3
- scipy_sparse was updated to eb3091b4ee4b
- sklearn_build_pipeline was updated to 019bd8289224
- sklearn_build_pipeline was updated to 653be9c354ec
- sklearn_build_pipeline was updated to 6d056a1b2249
- sklearn_build_pipeline was updated to 7388ffedf12c
- sklearn_build_pipeline was updated to 913ee94945f3
- sklearn_build_pipeline was updated to 9ddacd0b8c8b
- sklearn_clf_metrics was updated to 5621f2be9fbc
- sklearn_clf_metrics was updated to 5a21a631d2eb
- sklearn_clf_metrics was updated to 68afcd163b3d
- sklearn_clf_metrics was updated to 9bf11bbeccc3
- sklearn_clf_metrics was updated to ae69f6918abe
- sklearn_clf_metrics was updated to e8ded63c3fa8
- sklearn_data_preprocess was updated to 4952fe39b61d
- sklearn_data_preprocess was updated to 4fc54bac4254
- sklearn_data_preprocess was updated to 50b3e080cef0
- sklearn_data_preprocess was updated to 66df2aa6cd6b
- sklearn_data_preprocess was updated to 9ac0b78c6b6d
- sklearn_data_preprocess was updated to 9e43ee712723
- sklearn_discriminant_classifier was updated to 1d2bcebc8678
- sklearn_discriminant_classifier was updated to 3e2921875c58
- sklearn_discriminant_classifier was updated to 5552eda109bd
- sklearn_discriminant_classifier was updated to 7696d389675c
- sklearn_discriminant_classifier was updated to 8e49f26b14d3
- sklearn_discriminant_classifier was updated to 95d0f81e46e8
- sklearn_ensemble was updated to 172365bc2b5f
- sklearn_ensemble was updated to 360330a867f0
- sklearn_ensemble was updated to 47d4baa183b2
- sklearn_ensemble was updated to d868914bce73
- sklearn_ensemble was updated to e94395c672bd
- sklearn_ensemble was updated to f4d8a82e167c
- sklearn_estimator_attributes was updated to 7a64b9f39a46
- sklearn_estimator_attributes was updated to 84ddbf61e107
- sklearn_estimator_attributes was updated to 867caa39eaa4
- sklearn_estimator_attributes was updated to f4a7c3aa1e10
- sklearn_feature_selection was updated to 231e9a9849e8
- sklearn_feature_selection was updated to 8a307b946c58
- sklearn_feature_selection was updated to c2cd3219543a
- sklearn_feature_selection was updated to ec25331946b8
- sklearn_feature_selection was updated to fe47a06943fb
- sklearn_generalized_linear was updated to 63417d0acc72
- sklearn_generalized_linear was updated to 6cf4b82c72bc
- sklearn_generalized_linear was updated to a9474cdda506
- sklearn_generalized_linear was updated to b628de0d101f
- sklearn_generalized_linear was updated to bf32512b1418
- sklearn_generalized_linear was updated to f12dc92b6699
- sklearn_model_validation was updated to 492d34a75de6
- sklearn_model_validation was updated to 5895fe0b8bde
- sklearn_model_validation was updated to 60b8a683ba99
- sklearn_model_validation was updated to 887e0aaa482e
- sklearn_model_validation was updated to 95b04e086576
- sklearn_model_validation was updated to cf9aa11b91c8
- sklearn_nn_classifier was updated to 23fb598a09d7
- sklearn_nn_classifier was updated to 9871a634540f
- sklearn_nn_classifier was updated to c030e4bb1b39
- sklearn_nn_classifier was updated to e9ba818e7877
- sklearn_nn_classifier was updated to fa2d8618bab0
- sklearn_nn_classifier was updated to fbc38059bb8f
- sklearn_numeric_clustering was updated to 27903ce9b4be
- sklearn_numeric_clustering was updated to 2d7c60aa6c62
- sklearn_numeric_clustering was updated to 6edcaa8dbb9f
- sklearn_numeric_clustering was updated to 9ff214ce6ec2
- sklearn_numeric_clustering was updated to abb5a3f256e3
- sklearn_numeric_clustering was updated to ff955d4fc5b1
- sklearn_pairwise_metrics was updated to 1682b64aad9e
- sklearn_pairwise_metrics was updated to 20b7295ae6e9
- sklearn_pairwise_metrics was updated to 62945303e6bd
- sklearn_pairwise_metrics was updated to 86020dbc8ef7
- sklearn_pairwise_metrics was updated to a61375e306c1
- sklearn_pairwise_metrics was updated to bd9481c0af38
- sklearn_regression_metrics was updated to 146133e04fbc
- sklearn_regression_metrics was updated to 203b2ade8097
- sklearn_regression_metrics was updated to 3703b5796442
- sklearn_regression_metrics was updated to 3badea963c3b
- sklearn_regression_metrics was updated to 40ee30b5e456
- sklearn_regression_metrics was updated to 64c87ceb6766
- sklearn_sample_generator was updated to 0ba38603a0d6
- sklearn_sample_generator was updated to 52ea044c667f
- sklearn_sample_generator was updated to 6b14fe097541
- sklearn_sample_generator was updated to 86a086d2bbed
- sklearn_sample_generator was updated to 97b467e06354
- sklearn_sample_generator was updated to db7eb7302fc9
- sklearn_searchcv was updated to 103aaea17119
- sklearn_searchcv was updated to 1c4a241bef5c
- sklearn_searchcv was updated to 21d3e08b1a48
- sklearn_searchcv was updated to 3d5b2491c62b
- sklearn_searchcv was updated to 68753d45815f
- sklearn_searchcv was updated to 907bb0418c9f
- sklearn_stacking_ensemble_models was updated to 0e20520a63ee
- sklearn_stacking_ensemble_models was updated to 22560cf810b8
- sklearn_stacking_ensemble_models was updated to 6717e5cc4d05
- sklearn_svm_classifier was updated to 1a9d5a8fff12
- sklearn_svm_classifier was updated to 295c383c3282
- sklearn_svm_classifier was updated to 73d2ef652879
- sklearn_svm_classifier was updated to 7d7379dfef8b
- sklearn_svm_classifier was updated to 9295c5f34630
- sklearn_svm_classifier was updated to e1b37bdc5fbd
- sklearn_train_test_eval was updated to 20bb2a45f922
- sklearn_train_test_eval was updated to cc49634df38f
- sklearn_train_test_eval was updated to e23cfe4be9d4
- heatmap was updated to db1d80e89156
- transformation was updated to d9e05021553c
- iwtomics_loadandplot was updated to 0027f3287b34
- iwtomics_loadandplot was updated to 8eb7dded0d52
- iwtomics_loadandplot was updated to ee7dd07a530e
- iwtomics_plotwithscale was updated to 25030f0d1154
- iwtomics_plotwithscale was updated to 4bd560127b68
- iwtomics_testandplot was updated to 800c7e974e3b
- iwtomics_testandplot was updated to 926cdd3158ae
FASTA/FASTQ
- fasta_filter_by_length was updated to 2fd6033d0e9c
- fasta_filter_by_length was updated to c8cd0a03db49
- fastq_combiner was updated to 56389130cb63
- fastq_combiner was updated to b05e39b9c170
- fastq_filter was updated to 06934412f56d
- fastq_groomer was updated to 71e5fa25b8a2
- fastq_groomer was updated to 8611b80a14d6
- fastq_manipulation was updated to 4ac14b275aca
- fastq_masker_by_quality was updated to eb592e9ec47a
- fastq_paired_end_deinterlacer was updated to b7ce72b00e62
- fastq_paired_end_interlacer was updated to 3e396e702cea
- fastq_paired_end_joiner was updated to 09a2199cd356
- fastq_paired_end_splitter was updated to 9bbe5b7ffa12
- fastq_stats was updated to e2cf940128d5
- fastq_to_tabular was updated to ccf4e1d1fcbe
- fastq_trimmer was updated to 2d0d13b0b0f1
- fastqc was updated to ddf5c37952ac
- fastqtofasta was updated to 4844c1810c16
- fastx_artifacts_filter was updated to dd3737e40dce
- fastx_barcode_splitter was updated to 015dc921d814
- fastx_renamer was updated to 3599f5451ee2
- fastx_trimmer was updated to 547e8d00f11c
- tabular_to_fastq was updated to b8cdc0507586
- seqtk was updated to 288f7f69fe25
Picard
- picard was updated to 2a17c789e0a5
- picard was updated to 6f9c0884a3e7
Phylogenetics
- gstf_preparation was updated to f4acbfe8d6fe
- t_coffee was updated to 0a189243186d
- t_coffee was updated to c67bd5acbae2
Get Data
- ensembl_get_feature_info was updated to 234d7babf34b
- ensembl_get_genetree was updated to 0602dcf02768
- ensembl_get_sequences was updated to 3b686142e9c2
- spocc_occ was updated to 724ad06de5a5
- ebi_metagenomics_run_downloader was updated to e2e9fae080ad
Multiple Alignments
- cdhit was updated to 93f25d52cfa5
- mummer_mummer was updated to 26f2cc1cc1e9
Nanopore
- nanopolish_eventalign was updated to 5c360c46eac7
- nanopolish_eventalign was updated to bee42f615f28
- nanopolish_methylation was updated to 07cf146e8964
- nanopolish_methylation was updated to f9dadc362197
- nanopolish_variants was updated to 639b3a5bb415
- nanopolish_variants was updated to f1cb13497323
- nanoplot was updated to db1eeffba23e
Quality Control
- multiqc was updated to b2f1f75d49c4
Metabolomics
- xcms_group was updated to 9e45e1c404a4
- xcms_merge was updated to 47f9b1fd5ce6
- xcms_summary was updated to 27e7da5f6848
Collection Operations
- split_file_to_collection was updated to 2ddc36385d7a
SAM/BAM
- bam_to_sam was updated to 88eedb4abea0
- bam_to_sam was updated to f57df915aa10
- bamtools_filter was updated to bd735cae4ce6
- sam_to_bam was updated to b77f7b516b17
- sam_to_bam was updated to cf1ffd88f895
- sam_to_bam was updated to f7a0d41036c7
- samtool_filter2 was updated to b7aa423007bf
- samtools_calmd was updated to 3d873744df7e
- samtools_calmd was updated to e65c2cd0964c
- samtools_flagstat was updated to db17d5321bad
- samtools_idxstats was updated to 811fc2d75ad4
- samtools_phase was updated to b5c3b1856370
- samtools_rmdup was updated to 586f9e1cdb2b
- samtools_stats was updated to 145f6d74ff5e
- samtools_stats was updated to 5a08c09b9311
- ngsutils_bam_filter was updated to 49bf71fbc574
- ngsutils_bam_filter was updated to aecfe10118ed
- qualimap_multi_bamqc was updated to 16beb83e370c
- samtools_fastx was updated to a8d69aee190e
- samtools_fixmate was updated to bc0cc7bfbfe9
- samtools_markdup was updated to 83b8e36e9cbe
- samtools_merge was updated to 740ce0a18f0d
Assembly
- disco was updated to 6d447ebb2bf4
- quast was updated to 59db8ea8c845
- quast was updated to f30d03867854
- shovill was updated to 57d5928f456e
- unicycler was updated to 2db911a4efc5
- metaspades was updated to 01a241476407
- metaspades was updated to 05c394313b1c
GraphClust
- graphclust_postprocessing was updated to e080ebe95476
Mothur
- mothur_align_check was updated to e24361e6dd15
- mothur_align_seqs was updated to a9e49986bea7
- mothur_amova was updated to a781ac710ec3
- mothur_anosim was updated to 947036da99f2
- mothur_bin_seqs was updated to c9181cf15a6b
- mothur_chimera_bellerophon was updated to b6ddaa19dba3
- mothur_chimera_ccode was updated to 6e2e58e07e0f
- mothur_chimera_check was updated to c817602bbcbe
- mothur_chimera_perseus was updated to 29412cc05a3d
- mothur_chimera_pintail was updated to a98f92e8923d
- mothur_chimera_slayer was updated to cc983edb4db0
- mothur_chimera_uchime was updated to ac246f061fd5
- mothur_chop_seqs was updated to 3eeb1a2b2ae4
- mothur_classify_otu was updated to c384c39c9c27
- mothur_classify_seqs was updated to 5da484e2c7a4
- mothur_classify_tree was updated to 9046e85ccaf6
- mothur_clearcut was updated to 7e5184c75727
- mothur_cluster was updated to c31bcc652db3
- mothur_cluster_classic was updated to 2825bfdfee39
- mothur_cluster_fragments was updated to 836052d22684
- mothur_cluster_split was updated to c697df7d7a48
- mothur_collect_shared was updated to 818ec2fddea1
- mothur_collect_single was updated to ba873a97b0ac
- mothur_consensus_seqs was updated to b114aeea6c4c
- mothur_cooccurrence was updated to 5076b26f99d0
- mothur_corr_axes was updated to 0c76942a61e2
- mothur_count_groups was updated to 7b7f375b9b8d
- mothur_count_seqs was updated to 9cfefba79f40
- mothur_create_database was updated to b6a0f2e80e5d
- mothur_degap_seqs was updated to 104cea550c2f
- mothur_deunique_seqs was updated to 77e034e33a66
- mothur_deunique_tree was updated to 2b96ca0b44c0
- mothur_dist_seqs was updated to dcbf475d7d60
- mothur_dist_shared was updated to 3e2ca0c67e9d
- mothur_fastq_info was updated to 3ce3974a0e0b
- mothur_filter_seqs was updated to e71c69acde3f
- mothur_filter_shared was updated to 38bb70251d7a
- mothur_get_communitytype was updated to ad6d51c51be2
- mothur_get_coremicrobiome was updated to 80b24979c575
- mothur_get_dists was updated to 4d0f7df5a8f8
- mothur_get_group was updated to 83700d313432
- mothur_get_groups was updated to cfeef38a433e
- mothur_get_label was updated to 78e5065b27bd
- mothur_get_lineage was updated to d1abc038d4bd
- mothur_get_mimarkspackage was updated to 49f2db40374d
- mothur_get_otulabels was updated to b847275dfdf2
- mothur_get_otulist was updated to a68c119c37c5
- mothur_get_oturep was updated to 782220733828
- mothur_get_otus was updated to 971ab18e74d7
- mothur_get_rabund was updated to 08a740b388d8
- mothur_get_relabund was updated to d53c7d63b940
- mothur_get_sabund was updated to 0bc1dc0c6aad
- mothur_get_seqs was updated to 32a95d4cd850
- mothur_get_sharedseqs was updated to deb8f26d8d66
- mothur_heatmap_bin was updated to a271eda55001
- mothur_heatmap_sim was updated to 2f93c7bba6f8
- mothur_homova was updated to 9a215084d776
- mothur_indicator was updated to ba8150cff807
- mothur_lefse was updated to c98e47f7b233
- mothur_libshuff was updated to 7c46233bfa06
- mothur_list_otulabels was updated to 72c4cd2b5b74
- mothur_list_seqs was updated to 0ad4a88e6314
- mothur_make_biom was updated to cfdfa41e01a4
- mothur_make_contigs was updated to c3203178c41f
- mothur_make_design was updated to 4b18c3d54bc6
- mothur_make_fastq was updated to 25b9449a5f3d
- mothur_make_fastq was updated to e9b12c5ad27f
- mothur_make_group was updated to 63a75db03ecc
- mothur_make_lefse was updated to 2da52b4bf3dc
- mothur_make_shared was updated to f7a10f16aa99
- mothur_make_sra was updated to afa357a7b58a
- mothur_mantel was updated to 3179a29d3b70
- mothur_merge_files was updated to 80e3857bf744
- mothur_merge_groups was updated to 47d3c31340d7
- mothur_merge_sfffiles was updated to 0778c4b6a300
- mothur_merge_taxsummary was updated to a2dda99b6d79
- mothur_metastats was updated to f50fa0018f6f
- mothur_mimarks_attributes was updated to 7986e1c4bc23
- mothur_nmds was updated to 555a89f14c55
- mothur_normalize_shared was updated to 5a00f7d92dc2
- mothur_otu_association was updated to 12af8c375bb8
- mothur_otu_hierarchy was updated to abf3d41b7428
- mothur_pairwise_seqs was updated to 39c7213ca279
- mothur_parse_list was updated to 59906aed724a
- mothur_parsimony was updated to da7f70ebfb4c
- mothur_pca was updated to e3638c927d93
- mothur_pcoa was updated to 1c1d69d94f7d
- mothur_pcr_seqs was updated to 0ce27975e549
- mothur_phylo_diversity was updated to e398beade8e7
- mothur_phylotype was updated to 249cdeb3cdb1
- mothur_pre_cluster was updated to baba9fff9dba
- mothur_primer_design was updated to d6f7c58a89d0
- mothur_rarefaction_shared was updated to 325ecaad64c0
- mothur_rarefaction_single was updated to 5c2157147393
- mothur_remove_dists was updated to f7dba43ea52c
- mothur_remove_groups was updated to 2d5258c52be0
- mothur_remove_lineage was updated to 380e75c0ae8e
- mothur_remove_otulabels was updated to 2cbf56d15f4b
- mothur_remove_otus was updated to 530698de365d
- mothur_remove_rare was updated to da5fbab58754
- mothur_remove_seqs was updated to 2fa446f85b18
- mothur_remove_seqs was updated to 92eb629218e1
- mothur_reverse_seqs was updated to db762c766b89
- mothur_screen_seqs was updated to 595419d427b6
- mothur_sens_spec was updated to 084dc4e8caae
- mothur_seq_error was updated to bb53c2c29c23
- mothur_sffinfo was updated to 387d9e58afc2
- mothur_shhh_flows was updated to b6a88afacb17
- mothur_shhh_seqs was updated to 151a711dec84
- mothur_sort_seqs was updated to 2f6a9498447e
- mothur_split_abund was updated to 3a364dd93195
- mothur_split_groups was updated to 627cf4d36194
- mothur_sub_sample was updated to 2986f7b01e74
- mothur_summary_qual was updated to 315cf5ff78f9
- mothur_summary_seqs was updated to d7ea2d0b4917
- mothur_summary_shared was updated to 47370a4efc95
- mothur_summary_single was updated to de4801f05e5e
- mothur_summary_tax was updated to 4db7f1329d0e
- mothur_tree_shared was updated to 73dd30cbca20
- mothur_trim_flows was updated to 51da4c69105d
- mothur_trim_seqs was updated to c49a6454726c
- mothur_trim_seqs was updated to fc17c9a3c800
- mothur_unifrac_unweighted was updated to 46ba42ec466b
- mothur_unifrac_weighted was updated to 20bc6be9e1df
- mothur_unique_seqs was updated to 8fce7ef726c8
- mothur_venn was updated to 8df8d8b67b13
hca_sc_scanpy_tools
- scanpy_compute_graph was updated to 6b2673e1f4c6
- scanpy_find_cluster was updated to 455846afcc73
- scanpy_find_markers was updated to c18f446dcfbf
- scanpy_find_variable_genes was updated to 321f1b073cbc
- scanpy_parameter_iterator was updated to 1a30a61effea
- scanpy_parameter_iterator was updated to c6d3a3609a8a
- scanpy_parameter_iterator was updated to ce09dd900257
- scanpy_read_10x was updated to cf55e0e462da
- scanpy_run_pca was updated to 8b4dae3748d3
- scanpy_run_tsne was updated to 3589dfaef3f6
- scanpy_run_umap was updated to c111d7d04f0b
- scanpy_scale_data was updated to 4c73b070cbff
Mapping
- bowtie2 was updated to a54de7e658f7
- bwa was updated to 8d2a528a9513
- rgrnastar was updated to 41929aa1e7f3
- rgrnastar was updated to d82339e37e8e
- rna_starsolo was updated to 61cb2042581a
- star_fusion was updated to 0b44456754e2
Join, Subtract and Group
- collection_column_join was updated to 58228a4d58fe
Graph/Display Data
- plotly_ml_performance_plots was updated to 85da91bbdbfb
- plotly_regression_performance_plots was updated to 389227fa1864
- fasta_nucleotide_color_plot was updated to 0fba45ac3987
- ggplot2_heatmap was updated to f44dc95928aa
- ggplot2_heatmap was updated to fe8d4655ee10
- ggplot2_histogram was updated to 1f0242e49a58
- ggplot2_histogram was updated to 63a595b451d1
- ggplot2_histogram was updated to f52035800250
- ggplot2_pca was updated to bb6ec8e5387f
- ggplot2_pca was updated to c21099566418
- ggplot2_point was updated to 9a482995958c
- ggplot2_violin was updated to 3a270cee1239
- ggplot2_violin was updated to 43778344b955
- jbrowse was updated to 8f33c9fbc119
- volcanoplot was updated to 6d532d760950
Imaging
- coordinates_of_roi was updated to 0d30ffea8874
- coordinates_of_roi was updated to 24d9bd16c953
- imagecoordinates_flipaxis was updated to 5a210baa2ff1
- landmark_registration was updated to a71239f3543a
- overlay_segmentation_mask was updated to 63b2a10b1001
- visceral_evaluatesegmentation was updated to d098aed00229
RNA Analysis
- alevin was updated to 908a8d400fa2
- alevin was updated to e53f19161c59
- salmon was updated to 6b0ba6de1424
- salmonquantmerge was updated to 992c077f6e41
- deseq2 was updated to 9a616afdbda5
- deseq2 was updated to a416957ee305
- deseq2 was updated to e5c8afac22a7
- edger was updated to 555659de7321
- heinz was updated to e41ec5af7472
- migmap was updated to 6ad9d48a512e
- qualimap_counts was updated to e020be4f281b
- slamdunk was updated to fe3fe68b09a7
- trinity_abundance_estimates_to_matrix was updated to cdde9062b49c
- trinity_contig_exn50_statistic was updated to 03ca5ddc37a9
- trinity_filter_low_expr_transcripts was updated to b10270739c1b
- trinity_run_de_analysis was updated to fd588e138aa6
- paralyzer was updated to 4dbe81be8b81
Annotation
- abricate was updated to 4efdca267d51
- annotatemyids was updated to 9ab35a2245ce
- annotatemyids was updated to b467a89be0c6
- exonerate was updated to f48ed38dfddf
- goenrichment was updated to 5ace5c7d1a86
- goseq was updated to ade933eff007
- goslimmer was updated to de3e053bd6a5
- roary was updated to e02e9af2743f
- transtermhp was updated to 1a1ec22a7e28
- sortmerna was updated to 185effcdfb68
- sortmerna was updated to 1eafcc450052
Single-cell
- raceid_clustering was updated to 528a43b1cbcf
- raceid_inspectclusters was updated to 0fa80752a314
- raceid_inspectclusters was updated to 106718959281
- raceid_inspecttrajectory was updated to 4164c0da0a5d
- raceid_inspecttrajectory was updated to 5156383d3a5d
- raceid_trajectory was updated to 87de515af823
- raceid_trajectory was updated to da7ff78fe296
Evolution
- codeml was updated to 961a712f9743
- iqtree was updated to 288db50d1fb9
- structure was updated to 64e681a1cad5
Operate on Genomic Intervals
- bedtools was updated to 87ee588b3d45
Filter and Sort
- gffcompare was updated to 0f710191a66d
Motif Tools
- meme_fimo was updated to 4eb02864e5df
- meme_psp_gen was updated to a0fa4efeeee3
Data Managers
- data_manager_qiime_database_downloader was updated to 9e86c09a6cae
- data_manager_salmon_index_builder was updated to 6b0f2bdcc1b7
ChemicalToolBox
- autodock_vina_prepare_box was updated to 4f7c5cad3377
- autodock_vina_prepare_box was updated to 761762031eee
- autodock_vina_prepare_ligand was updated to 965badb456d4
- ctb_rdkit_descriptors was updated to 6674260c1459
- mordred was updated to ea68b86303e2
- openbabel_addh was updated to d2e6d682bcd0
- openbabel_change_title was updated to 9c15e92bed39
- openbabel_compound_convert was updated to a9df9aae60bb
- openbabel_filter was updated to 0e382252d23d
- openbabel_genprop was updated to aafffb37d168
- openbabel_obgrep was updated to 99517f9b780d
- openbabel_remduplicates was updated to 65254472e5b4
- openbabel_remions was updated to 04da8dc033e1
- openbabel_remove_protonation_state was updated to 00263ca6ffb8
- openbabel_remsmall was updated to c8d8caa9a54d
- openbabel_spectrophore_search was updated to f93f3e01abe8
- openbabel_subsearch was updated to ab2b9d87b067
- openbabel_svg_depiction was updated to 672b3365ddbc
- osra was updated to 0916781bc971
- bio3d_dccm was updated to 18440ff54f63
- bio3d_pca was updated to 994c509873db
- bio3d_pca_visualize was updated to 7ac6900f4790
- bio3d_rmsd was updated to f871c9a8cb7c
- bio3d_rmsf was updated to 4354d92dc1aa
- gmx_em was updated to 6d9a9ab96195
- gmx_md was updated to d97433b7d482
- gmx_merge_topology_files was updated to 33ed3c26b8c2
- gmx_npt was updated to 93e39b0321c7
- gmx_nvt was updated to f425c1453662
- gmx_setup was updated to acc9922f3eab
- md_converter was updated to b61cbdf78765
- packmol was updated to 0b8a0ce446f5
EMBOSS
- emboss_5 was updated to 8992d258e42f
Text Manipulation
- split_file_on_column was updated to 90b52d8d6f2c
- tables_arithmetic_operations was updated to 82fa5062d611
- gff3_rebase was updated to e54940ea270c
- gff3_rebase was updated to ea35a85b941d
- table_compute was updated to 02c3e335a695
FASTQ Quality Control
- multiqc was updated to 161f4383df15
Convert Formats
- graphicsmagick_image_convert was updated to 627e8b38f24f
- graphicsmagick_image_convert was updated to c01226f0d828
- graphicsmagick_image_convert was updated to e88f1111d9e7
- uniprot_rest_interface was updated to 48522382b6a4
- msconvert was updated to cc5ccfa8ee28
- bam_to_scidx was updated to 408520e1ae1a
- bam_to_scidx was updated to b737f6d83f48
- crossmap_bam was updated to 5051467dc96a
- crossmap_bed was updated to e6c68525e9ee
- crossmap_gff was updated to e80720e27001
- crossmap_vcf was updated to 9d61d74f03a4
- crossmap_wig was updated to 3cb69f2ecea2
- gtftobed12 was updated to 75a14cc16d4d
- resize_coordinate_window was updated to 541f300f322d
- resize_coordinate_window was updated to 9ba78e8985dc
- ucsc_twobittofa was updated to d025a40bbff1
Proteomics
- cardinal_classification was updated to 585ef27873c9
- cardinal_combine was updated to fe5a1d487f32
- cardinal_data_exporter was updated to d94770c22f13
- cardinal_filtering was updated to 4b5513e25902
- cardinal_mz_images was updated to 27a4c660bbca
- cardinal_mz_images was updated to 773a24b240e1
- cardinal_preprocessing was updated to f172efe92629
- cardinal_quality_report was updated to 16556ca0196b
- cardinal_segmentations was updated to 09b638ceee45
- cardinal_spectra_plots was updated to 58c4aef16eb0
- hardklor was updated to c5b3b7eafd46
- maxquant was updated to 666f3453a99d
- maxquant_mqpar was updated to 256cc0e17454
- maxquant_mqpar was updated to 26693e21c3c8
- msgfplus was updated to ee56530a559f
- myrimatch was updated to a039a8d4c7e0
- megahit_contig2fastg was updated to b910d0cbc00b
- megahit_contig2fastg was updated to ed22349139ee
Metagenomic Analysis
- interproscan5 was updated to 82547f0d3a29
- dada2_assigntaxonomyaddspecies was updated to 18517edb4733
- dada2_dada was updated to ce4aec98949d
- dada2_filterandtrim was updated to cc41546adf56
- dada2_learnerrors was updated to fd892c845981
- dada2_makesequencetable was updated to 6e0946238688
- dada2_mergepairs was updated to 805daed21ef3
- dada2_plotcomplexity was updated to ab2030f217a9
- dada2_plotqualityprofile was updated to 371afe17d247
- dada2_removebimeradenovo was updated to 1937c2b4da7a
- dada2_seqcounts was updated to d26cea4b4cc4
Gemini
- gemini_actionable_mutations was updated to 3630a6e624d4
- gemini_amend was updated to 4bd4870ecd33
- gemini_annotate was updated to 8da05bf2b1d1
- gemini_burden was updated to fd6052cdc2c3
- gemini_db_info was updated to 124c5faef773
- gemini_dump was updated to c3da7c5f2141
- gemini_fusions was updated to 37f9901b674d
- gemini_fusions was updated to 5ff5586b4681
- gemini_fusions was updated to 8295781a3c27
- gemini_gene_wise was updated to 0db31ae5295e
- gemini_gene_wise was updated to 99d6e7b1b7f1
- gemini_gene_wise was updated to bc66ebfd4159
- gemini_interactions was updated to 2ddee6cd4a5a
- gemini_interactions was updated to 4234e3248f4d
- gemini_interactions was updated to 527c8e4a356f
- gemini_load was updated to 269c40fdcccb
- gemini_load was updated to 993ccb45326b
- gemini_load was updated to 9f74d7b0704a
- gemini_lof_sieve was updated to 9511c648d044
- gemini_lof_sieve was updated to be7ac09bc2fa
- gemini_lof_sieve was updated to e1920f41a1ca
- gemini_mendel_errors was updated to 009a8d614a83
- gemini_pathways was updated to 2bce41988d8e
- gemini_pathways was updated to 42d3c5077378
- gemini_pathways was updated to 66bc68095012
- gemini_qc was updated to 5d18dcbf2a0c
- gemini_qc was updated to 9872131c2377
- gemini_qc was updated to a875f940d8fd
- gemini_query was updated to 18f459744a97
- gemini_query was updated to 5596c2dc4218
- gemini_query was updated to ab195e756e5e
- gemini_recessive_and_dominant was updated to a78bfd5264b1
- gemini_region was updated to 0239bb5482c1
- gemini_roh was updated to 91b4db3e6df4
- gemini_roh was updated to 932a57d22888
- gemini_roh was updated to e7ad2a721c4b
- gemini_set_somatic was updated to 230c975e7759
- gemini_set_somatic was updated to 5fd4a5f9ee31
- gemini_set_somatic was updated to ef9991a4a9a7
- gemini_stats was updated to 4de57a28e609
- gemini_stats was updated to a0ee6874a23b
- gemini_stats was updated to ac761838cdaf
- gemini_windower was updated to 8f04952b8882
Climate Analysis
- cds_essential_variability was updated to b9d9fe0c2ce7
Variant Calling
- vcffilter was updated to 9442e22779ca
- vcffilter was updated to eae7c08ebb6f
- bcftools_call was updated to 01fd33bc2e75
- bcftools_call was updated to 3296c3680d96
- bcftools_call was updated to 4fa18320d29b
- bcftools_call was updated to b03984136ce4
- bcftools_cnv was updated to 635532ff1ac9
- bcftools_cnv was updated to 86737d0f7fab
- bcftools_consensus was updated to a87ae767b01d
- bcftools_consensus was updated to c82130967bd2
- bcftools_consensus was updated to f867422772d6
- bcftools_csq was updated to 33df4e68959b
- bcftools_csq was updated to fa67bc6d3b41
- bcftools_norm was updated to 93bdd3bf5743
- bcftools_norm was updated to da6fc9f4a367
- bcftools_plugin_color_chrs was updated to 05928e15da21
- bcftools_plugin_color_chrs was updated to 87aa2e0a126e
- bcftools_plugin_frameshifts was updated to 77877eec9e8b
- bcftools_plugin_frameshifts was updated to a1c4d50c97e0
- snippy was updated to 4df82423ba61
- snippy was updated to 9bccc8404a3c
- snpeff was updated to 36dc3690a82c
- snpeff was updated to 479c4f2f4826
- snpeff was updated to 8f92c2b26e6d
- varscan_copynumber was updated to 0bc56f894766
- varscan_copynumber was updated to 192bd5b78300
- varscan_copynumber was updated to c24910ad5441
- varscan_copynumber was updated to e814a042315f
- varscan_mpileup was updated to 1e667badbe87
- varscan_mpileup was updated to 45288fb1f3f5
- varscan_mpileup was updated to 7c5e867820cf
- varscan_mpileup was updated to d7e6c347538d
- varscan_mpileup was updated to e3f170cc4f95
NCBI Blast
- taxonomy_krona_chart was updated to 020b3087d0b7
- kraken2 was updated to d4bb87ca916d
- kraken_taxonomy_report was updated to 528a1d91b066
- kraken_taxonomy_report was updated to b97694b21bc3
RAD-seq
- stacks_assembleperead was updated to b08cd32d03ad
- stacks_assembleperead was updated to bc108981ca68
- stacks_clonefilter was updated to a0a51078cb61
- stacks_cstacks was updated to 5bd1418f4227
- stacks_cstacks was updated to dab92afa0c98
- stacks_cstacks was updated to ff1f282d731e
- stacks_denovomap was updated to 2b1dd7ab69f7
- stacks_genotypes was updated to 00f4a4e553ae
- stacks_genotypes was updated to 5af94af9ec8f
- stacks_procrad was updated to 57910d476be9
- stacks_procrad was updated to 8fe258d72ff3
- stacks_pstacks was updated to 7ebc7d229deb
- stacks_pstacks was updated to ede5223bc7f1
- stacks_refmap was updated to 4ee074ca88fb
- stacks_refmap was updated to 7c42e6768c41
- stacks_rxstacks was updated to 2360d8cf42f7
- stacks_rxstacks was updated to 9d0ac63dcfcd
- stacks_sstacks was updated to 95e37a28704b
- stacks_sstacks was updated to e38d181d4e72
- stacks_stats was updated to 3c4c922a4fb0
- stacks_ustacks was updated to b6de94f2edc0
- stacks_ustacks was updated to e5c97f09fe06