On 2019-12-14, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #169

Statistics

• graphembed was updated to f28678233baf

Assembly

• abyss was updated to 3ce74eab308b

Convert Formats

• resize_coordinate_window was updated to 4eb3cc1f8466

Mothur

• mothur_align_check was updated to 0399e5aeaac6
• mothur_align_seqs was updated to 152ae632ab19
• mothur_amova was updated to a781ac710ec3
• mothur_amova was updated to d0074e20ae76
• mothur_anosim was updated to 947036da99f2
• mothur_anosim was updated to 98687b00be79
• mothur_bin_seqs was updated to 4bf939e17fa4
• mothur_chimera_bellerophon was updated to b6ddaa19dba3
• mothur_chimera_bellerophon was updated to cf1db89b0fda
• mothur_chimera_ccode was updated to 6e2e58e07e0f
• mothur_chimera_ccode was updated to b6e0f8a9bc6b
• mothur_chimera_check was updated to 4b57c3241cbc
• mothur_chimera_perseus was updated to 0f3baac24045
• mothur_chimera_pintail was updated to 93b61db8bdb6
• mothur_chimera_slayer was updated to 753321ddded9
• mothur_chimera_uchime was updated to ac246f061fd5
• mothur_chimera_uchime was updated to f1742cf23d95
• mothur_chop_seqs was updated to 29f963e785a0
• mothur_classify_otu was updated to c384c39c9c27
• mothur_classify_otu was updated to ec7c3ecca41a
• mothur_classify_seqs was updated to 2f5d4d86eb9a
• mothur_classify_tree was updated to 9046e85ccaf6
• mothur_classify_tree was updated to fec1c905cb22
• mothur_clearcut was updated to 7ad44d831a1f
• mothur_cluster was updated to 5ea1f1f9d801
• mothur_cluster_classic was updated to 2825bfdfee39
• mothur_cluster_classic was updated to a649d3ca67b7
• mothur_cluster_fragments was updated to 5fa9b6d481f6
• mothur_cluster_split was updated to a9924d4f538f
• mothur_collect_shared was updated to 44d5c9ba72e6
• mothur_collect_single was updated to ba873a97b0ac
• mothur_collect_single was updated to d3b196069f6f
• mothur_consensus_seqs was updated to b114aeea6c4c
• mothur_consensus_seqs was updated to bc2b62823fcc
• mothur_cooccurrence was updated to 0e05f58541d0
• mothur_corr_axes was updated to 0c76942a61e2
• mothur_corr_axes was updated to 1ba1fe2a0438
• mothur_count_groups was updated to 28867c3771e1
• mothur_count_seqs was updated to 59a962f57cb5
• mothur_create_database was updated to 319884cd49a3
• mothur_degap_seqs was updated to 104cea550c2f
• mothur_degap_seqs was updated to 2393ecc7387c
• mothur_deunique_seqs was updated to 73aeeac872d7
• mothur_deunique_tree was updated to 2b96ca0b44c0
• mothur_deunique_tree was updated to ec5e03c0f18e
• mothur_dist_seqs was updated to 502323efbd82
• mothur_dist_shared was updated to 1a899fec55e1
• mothur_fastq_info was updated to 1edab4936153
• mothur_filter_seqs was updated to b587a3a485b8
• mothur_filter_shared was updated to 007311ce6297
• mothur_get_communitytype was updated to 4e708ec53432
• mothur_get_coremicrobiome was updated to 42244e3619cf
• mothur_get_dists was updated to 4d0f7df5a8f8
• mothur_get_dists was updated to c8fbbada97dc
• mothur_get_group was updated to 081d0fbf9751
• mothur_get_groups was updated to cfeef38a433e
• mothur_get_groups was updated to e4d70a26c19f
• mothur_get_label was updated to 78e5065b27bd
• mothur_get_label was updated to 80b791e2a7bd
• mothur_get_lineage was updated to 563718e09fa8
• mothur_get_mimarkspackage was updated to 49f2db40374d
• mothur_get_mimarkspackage was updated to 6dbc31423c24
• mothur_get_otulabels was updated to b847275dfdf2
• mothur_get_otulabels was updated to fd62ac4a6b84
• mothur_get_otulist was updated to a68c119c37c5
• mothur_get_otulist was updated to f0cf508cdc98
• mothur_get_oturep was updated to 782220733828
• mothur_get_oturep was updated to f821624d355c
• mothur_get_otus was updated to 8a67e60260ca
• mothur_get_rabund was updated to 08a740b388d8
• mothur_get_rabund was updated to bd695645069f
• mothur_get_relabund was updated to b07e7be6326a
• mothur_get_sabund was updated to 0bc1dc0c6aad
• mothur_get_sabund was updated to a41ba5f5f6b8
• mothur_get_seqs was updated to 32a95d4cd850
• mothur_get_seqs was updated to 8b8c7cf6738c
• mothur_get_sharedseqs was updated to 67faa6dacbae
• mothur_heatmap_bin was updated to 83d3c6dba0b1
• mothur_heatmap_sim was updated to 2f93c7bba6f8
• mothur_heatmap_sim was updated to c2dead9d38c4
• mothur_homova was updated to 948d5731dbe0
• mothur_indicator was updated to 39750697d7a6
• mothur_lefse was updated to c98e47f7b233
• mothur_lefse was updated to d47a909185ef
• mothur_libshuff was updated to 45a78bb8819d
• mothur_list_otulabels was updated to 72c4cd2b5b74
• mothur_list_otulabels was updated to e643cc6c39cb
• mothur_list_seqs was updated to 0ad4a88e6314
• mothur_list_seqs was updated to 9b600578c108
• mothur_make_biom was updated to cfdfa41e01a4
• mothur_make_biom was updated to e29c05b88096
• mothur_make_contigs was updated to c3203178c41f
• mothur_make_contigs was updated to f65c34178487
• mothur_make_design was updated to 4405d0fbfada
• mothur_make_fastq was updated to 1684157db3c1
• mothur_make_group was updated to 182b471ed56b
• mothur_make_lefse was updated to 2da52b4bf3dc
• mothur_make_lefse was updated to 88be2167f369
• mothur_make_shared was updated to 60f0853e33f3
• mothur_make_sra was updated to afa357a7b58a
• mothur_make_sra was updated to bf608ff56ecf
• mothur_mantel was updated to 3179a29d3b70
• mothur_mantel was updated to bcc475f1af4a
• mothur_merge_files was updated to 21a9274337f5
• mothur_merge_groups was updated to 47d3c31340d7
• mothur_merge_groups was updated to f170676a1d12
• mothur_merge_sfffiles was updated to 0778c4b6a300
• mothur_merge_sfffiles was updated to 26ddda2d2462
• mothur_merge_taxsummary was updated to 3a2ee62cb710
• mothur_metastats was updated to f50fa0018f6f
• mothur_metastats was updated to fe9f4a0d61d3
• mothur_mimarks_attributes was updated to 7986e1c4bc23
• mothur_mimarks_attributes was updated to 8354a02a83e1
• mothur_nmds was updated to 3cc04a065490
• mothur_normalize_shared was updated to 5a00f7d92dc2
• mothur_normalize_shared was updated to a8bc62f05cfa
• mothur_otu_association was updated to 12af8c375bb8
• mothur_otu_association was updated to a2511c40e7b8
• mothur_otu_hierarchy was updated to 693fbc55f70e
• mothur_pairwise_seqs was updated to 39c7213ca279
• mothur_pairwise_seqs was updated to 4a73df58d56b
• mothur_parse_list was updated to 59906aed724a
• mothur_parse_list was updated to 99579d05a632
• mothur_parsimony was updated to da7f70ebfb4c
• mothur_parsimony was updated to fd6cebeaa143
• mothur_pca was updated to 74d1b765843b
• mothur_pcoa was updated to 1c1d69d94f7d
• mothur_pcoa was updated to 485e149a8aba
• mothur_pcr_seqs was updated to 0a23bfe005be
• mothur_phylo_diversity was updated to c7d41770f4ce
• mothur_phylotype was updated to 249cdeb3cdb1
• mothur_phylotype was updated to 551a2d9c0aa7
• mothur_pre_cluster was updated to baba9fff9dba
• mothur_pre_cluster was updated to d848e23e9343
• mothur_primer_design was updated to 487977c2c586
• mothur_rarefaction_shared was updated to 325ecaad64c0
• mothur_rarefaction_shared was updated to 50312cd2fc7a
• mothur_rarefaction_single was updated to 5c2157147393
• mothur_rarefaction_single was updated to b5bcc4bf53d1
• mothur_remove_dists was updated to 11795a719c90
• mothur_remove_groups was updated to 2d5258c52be0
• mothur_remove_groups was updated to 3fac82ad3f01
• mothur_remove_lineage was updated to 2a4d6c3d9b6d
• mothur_remove_otulabels was updated to 2cbf56d15f4b
• mothur_remove_otulabels was updated to 5133ef623148
• mothur_remove_otus was updated to 38c03ac3d622
• mothur_remove_rare was updated to 2531a323f0c2
• mothur_remove_seqs was updated to 92eb629218e1
• mothur_remove_seqs was updated to eec15ff2d3c9
• mothur_reverse_seqs was updated to db762c766b89
• mothur_reverse_seqs was updated to f7f5cd1ae299
• mothur_screen_seqs was updated to 595419d427b6
• mothur_screen_seqs was updated to a136fc12b26a
• mothur_sens_spec was updated to 084dc4e8caae
• mothur_sens_spec was updated to c3f0b847dc40
• mothur_seq_error was updated to 2851c368b879
• mothur_shhh_flows was updated to 4e6cdbeaf3b5
• mothur_shhh_seqs was updated to 151a711dec84
• mothur_shhh_seqs was updated to aa189387c19c
• mothur_sort_seqs was updated to 2f6a9498447e
• mothur_sort_seqs was updated to 334476d3e35d
• mothur_split_abund was updated to 3a364dd93195
• mothur_split_abund was updated to fa40dca23957
• mothur_split_groups was updated to 627cf4d36194
• mothur_split_groups was updated to 99c44fc3cd32
• mothur_sub_sample was updated to 0f4dfa0332e8
• mothur_summary_qual was updated to 11be0e5f3ebb
• mothur_summary_seqs was updated to 4041dc69af62
• mothur_summary_shared was updated to 47370a4efc95
• mothur_summary_shared was updated to 81df36f90a1b
• mothur_summary_single was updated to 72be09dfd803
• mothur_summary_tax was updated to 4db7f1329d0e
• mothur_summary_tax was updated to c07510858fb0
• mothur_tree_shared was updated to 73dd30cbca20
• mothur_tree_shared was updated to af2b5be87d4f
• mothur_trim_flows was updated to 45f3904bfdd2
• mothur_trim_seqs was updated to dc318dec8b86
• mothur_unifrac_unweighted was updated to 46ba42ec466b
• mothur_unifrac_unweighted was updated to 6a622b34394a
• mothur_unifrac_weighted was updated to 20bc6be9e1df
• mothur_unifrac_weighted was updated to 7cb9b120fd44
• mothur_unique_seqs was updated to 84722a5b79af
• mothur_venn was updated to 200defe4c42b

Proteomics

• cardinal_classification was updated to 42f6e30b00f2
• cardinal_combine was updated to b41107d8fe89
• cardinal_data_exporter was updated to 90d2e00e1304
• cardinal_filtering was updated to 528fb09022be
• cardinal_mz_images was updated to 27a4c660bbca
• cardinal_mz_images was updated to 4a05e47cd0ea
• cardinal_preprocessing was updated to ed9ed1e6cca2
• cardinal_quality_report was updated to 19f68d9ae773
• cardinal_segmentations was updated to b16b64ca7b7c
• cardinal_spectra_plots was updated to f17b01ec5c22

Motif Tools

• meme_fimo was updated to 0c5239d1aa65
• meme_meme was updated to 3f0dd362b755
• meme_psp_gen was updated to ff2f53a32d0e

Metagenomic Analysis

• cat_add_names was updated to 13192095fd5a
• cat_bins was updated to 0094893f5001
• cat_contigs was updated to 11a61934bfb3
• cat_prepare was updated to b6c5e7343617
• cat_summarise was updated to db1360aae489
• dada2_assigntaxonomyaddspecies was updated to 4d89978c6188
• dada2_dada was updated to 6b4ddc3b64bd
• dada2_filterandtrim was updated to 777f9846c56d
• dada2_learnerrors was updated to 39638e0aff59
• dada2_makesequencetable was updated to 9ccec6ed8e82
• dada2_mergepairs was updated to b1e55c248f17
• dada2_plotcomplexity was updated to 498d57610fcd
• dada2_plotqualityprofile was updated to fa11922f3d91
• dada2_removebimeradenovo was updated to 7f8f0e9fcb37
• dada2_seqcounts was updated to 4cc834cce4fb

Get Data

• ncbi_acc_download was updated to 1c58de56d587

RAD-seq

• stacks2_cstacks was updated to c541e62d6c56

Graph/Display Data

• bandage was updated to b2860df42e16
• circos was updated to fd59d783248a
• newick_utils was updated to b4163d2f64ab

DNA Metabarcoding

• obi_annotate was updated to 3021b9f5809f
• obi_clean was updated to 7d16de45c021
• obi_convert was updated to 4d705e3443a7
• obi_grep was updated to e9e49cf06b42
• obi_illumina_pairend was updated to 94f412098ac8
• obi_ngsfilter was updated to 76e69de726b2
• obi_sort was updated to 12b9e285ca1c
• obi_stat was updated to 39320fee9d70
• obi_tab was updated to 3299c7d5268f
• obi_uniq was updated to c0f7b58b4ce4

Data Managers

• data_manager_cat was updated to cffd8e2382cf
• data_manager_salmon_index_builder was updated to 57274fe5e01a

Variant Calling

• snippy was updated to 32f2211eeec3
• variant_analyzer was updated to 3556001ff2db

RNA Analysis

• masigpro was updated to 83f8b5ceff43
• migmap was updated to 587fa797ede9
• seurat was updated to 7319f83ae734
• tximport was updated to 206a71a69161

NCBI Blast

• taxonomy_krona_chart was updated to 1334cb4c6b68
• kraken was updated to aec58624706f
• kraken_filter was updated to 3d6570bffdb1
• kraken_report was updated to 1902d3de4a4f
• kraken_translate was updated to 9a5be5b1a5c9

EMBOSS

• emboss_5 was updated to dba489bfcd62

Genome Diversity

• fasttree was updated to ef46a404db96

Annotation

• repeat_masker was updated to d7540a923c7b
• prokka was updated to 3a0bd09a41dd
• fargene was updated to 239ce9f24386
• fargene was updated to 6f743c615c41

Single-cell

• anndata_export was updated to e0395cca2c57
• anndata_import was updated to e175d4067b00
• anndata_inspect was updated to 6a1a3dab235a
• anndata_manipulate was updated to a56baceb1900
• scanpy_cluster_reduce_dimension was updated to ac8e59e87ce3
• scanpy_cluster_reduce_dimension was updated to dc2de14881ba
• scanpy_filter was updated to 0a6de5e65992
• scanpy_filter was updated to e62673c32a5d
• scanpy_inspect was updated to 7d22964a8639
• scanpy_inspect was updated to cc0deb593fc8
• scanpy_normalize was updated to 8e0f141c8c66
• scanpy_normalize was updated to d7ea9b5e6df1
• scanpy_plot was updated to 4bfb75bb7c8e
• scanpy_plot was updated to a8f865950ac4
• scanpy_remove_confounders was updated to 00305dc2dd6f
• scanpy_remove_confounders was updated to 94c8f42efc47

SAM/BAM

• bamtools was updated to 4d343c1f606b
• bamtools_split was updated to 9676127a1ed2
• samtool_filter2 was updated to 649a225999a5