On 2020-02-17, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #182
Epigenetics
- seacr was updated to c8ff96b9fb97
Phylogenetics
- hyphy_absrel was updated to bf204aabbf56
- hyphy_bgm was updated to f276acfde263
- hyphy_busted was updated to 8c8640ca39d7
- hyphy_fade was updated to c16dd6b14657
- hyphy_fel was updated to 2442e8b5e363
- hyphy_fubar was updated to bece0bad8e89
- hyphy_gard was updated to c454b670f35f
- hyphy_meme was updated to 8366d5b28b49
- hyphy_relax was updated to 6dd3c73bd80a
- hyphy_slac was updated to 232bd7cd4639
- hyphy_sm19 was updated to c60fcdf8f01e
Picard
- picard was updated to 9ffcddf6f9c0
Graph/Display Data
- jbrowse was updated to 667e17248bfe
- pygenometracks was updated to 5cec5fb749f0
HiCExplorer
- schicexplorer_schiccorrectmatrices was updated to 104bedd292cd
Variant Calling
- bcftools_merge was updated to 9473302f4588
- lofreq_call was updated to dfadc322b065
RNA Analysis
- trinity was updated to d84caa5a98ad
- trinity_abundance_estimates_to_matrix was updated to 59fff1388bc2
- trinity_align_and_estimate_abundance was updated to 56162e446004
- trinity_contig_exn50_statistic was updated to 62b05e565a45
- trinity_filter_low_expr_transcripts was updated to 42c5172815f7
- trinity_run_de_analysis was updated to 04936df18de3
- trinity_super_transcripts was updated to 6f480aee5877
ChemicalToolBox
- ambertools_acpype was updated to 0d640d752e8a
- ambertools_antechamber was updated to d3cdf6fe972a
- ambertools_parmchk2 was updated to 3549852f413f
- gmx_trj was updated to e9cc595562b8
RAD-seq
- stacks2_cstacks was updated to c541e62d6c56
- stacks2_populations was updated to 38942a7e3801
Metagenomic Analysis
- mash was updated to 7f7d8b0c8517
- mash_sketch was updated to 68084b06ae83
Single-cell
- anndata_manipulate was updated to d4af736e7b83
- scanpy_cluster_reduce_dimension was updated to 6f2d2c7f77ee
- scanpy_filter was updated to 8b9610ab366a
- scanpy_inspect was updated to 08192eebb47d
- scanpy_normalize was updated to ec32793ce1dd
- scanpy_plot was updated to 8599fd07d140
- scanpy_remove_confounders was updated to 524aa62a6066
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