On 2020-03-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #190
ChemicalToolBox
- ctb_rdkit_descriptors was updated to 414edd9ea77d
- sdf_to_tab was updated to 193389d3a5f0
Gemini
- gemini_actionable_mutations was updated to 142d95ab942e
- gemini_amend was updated to be828b79bd4d
- gemini_annotate was updated to f2f3bc622a16
- gemini_burden was updated to 699ce2631e79
- gemini_burden was updated to df57188562f0
- gemini_db_info was updated to 7d75673f4d6f
- gemini_fusions was updated to 6e3d2bd01a96
- gemini_fusions was updated to 8151a5a0e4f6
- gemini_gene_wise was updated to 452104bdc655
- gemini_inheritance was updated to 18d13111692b
- gemini_interactions was updated to 2550239feed5
- gemini_load was updated to 45296e47d565
- gemini_lof_sieve was updated to 2969a1f43b7d
- gemini_pathways was updated to 9199331c3421
- gemini_qc was updated to 8414eecc3828
- gemini_qc was updated to 86e46972e183
- gemini_query was updated to da74170c55c7
- gemini_roh was updated to 345d41f3f574
- gemini_set_somatic was updated to 991049484627
- gemini_set_somatic was updated to e4e2128460e3
- gemini_stats was updated to 5c9efee9cb1e
- gemini_windower was updated to 0c58ba91d018
hca_sc_utils_viz
- salmon_kallisto_mtx_to_10x was updated to e42c217a450f
Convert Formats
- biom_convert was updated to 584008e574b2
hca_sc_scanpy_tools
- anndata_ops was updated to 35422e51b804
- scanpy_compute_graph was updated to c938bef2ca98
- scanpy_filter_cells was updated to 3dcc1629e420
- scanpy_filter_genes was updated to c678f671e151
- scanpy_find_cluster was updated to e4006a341f74
- scanpy_find_markers was updated to 0d63195a9b9f
- scanpy_find_variable_genes was updated to 1c59a010bb44
- scanpy_normalise_data was updated to a97c37e0309a
- scanpy_parameter_iterator was updated to 1a30a61effea
- scanpy_parameter_iterator was updated to 40feaaed47cf
- scanpy_plot_embed was updated to 210026a1a50a
- scanpy_plot_trajectory was updated to 2d00acd70129
- scanpy_read_10x was updated to 3ffd959f55f4
- scanpy_regress_variable was updated to 99c7380fae41
- scanpy_run_diffmap was updated to c869331377bf
- scanpy_run_dpt was updated to eb764ec05bb9
- scanpy_run_fdg was updated to 425f2e046231
- scanpy_run_paga was updated to eba43c4d86b9
- scanpy_run_pca was updated to 2dd53b944e78
- scanpy_run_tsne was updated to e61ba8b05578
- scanpy_run_umap was updated to b282c349bd67
- scanpy_scale_data was updated to 1bb1d4419c48
Machine Learning
- keras_batch_models was updated to 0dc3027df8f4
- keras_model_config was updated to 2d8478144bb2
- keras_train_and_eval was updated to ccd6269fad60
- ml_visualization_ex was updated to 222c02df5d55
- model_prediction was updated to 65820fb7257b
- sklearn_build_pipeline was updated to 97dce66fe158
- sklearn_clf_metrics was updated to 55703205546f
- sklearn_data_preprocess was updated to 826c3e68e7a9
- sklearn_discriminant_classifier was updated to 237ae72d58a3
- sklearn_ensemble was updated to 3ab7af14f1b5
- sklearn_estimator_attributes was updated to bd27a211182a
- sklearn_feature_selection was updated to ae0fafb53c1d
- sklearn_fitted_model_eval was updated to 044729657181
- sklearn_generalized_linear was updated to 3e4a7684d402
- sklearn_model_fit was updated to fc2e64a27e90
- sklearn_model_validation was updated to 0474777be433
- sklearn_nn_classifier was updated to 39ae3c043096
- sklearn_pairwise_metrics was updated to 7366e5108e9f
- sklearn_regression_metrics was updated to 1e98dbb8d5bc
- sklearn_sample_generator was updated to b4ba9602a36e
- sklearn_searchcv was updated to 1ae5dfd5ac17
- sklearn_svm_classifier was updated to d2afc87db26b
- sklearn_train_test_eval was updated to 1b68acd5ac08
- sklearn_train_test_split was updated to 145208b3579d
Variant Calling
- snippy was updated to 5bbf9eada9c2
RNA Analysis
- chira_collapse was updated to b3065e4df04c
- chira_extract was updated to 7e316a1fe98e
- chira_map was updated to d4355828b4d3
- chira_merge was updated to cfd572ff72aa
- chira_quantify was updated to 35a20c16a49e
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to fb981b15ccef
- hicexplorer_chicdifferentialtest was updated to 1e52af48d34e
- hicexplorer_chicplotviewpoint was updated to 136ebddd6ec3
- hicexplorer_chicqualitycontrol was updated to 7095bb186016
- hicexplorer_chicsignificantinteractions was updated to 3df84bb4486c
- hicexplorer_chicviewpoint was updated to 0dabfd9a496b
- hicexplorer_chicviewpointbackgroundmodel was updated to b9cdce1e57a1
- hicexplorer_hicadjustmatrix was updated to cc52e4ded146
- hicexplorer_hicaggregatecontacts was updated to 7066a1eda176
- hicexplorer_hicaverageregions was updated to 4b6a36c18e5e
- hicexplorer_hicbuildmatrix was updated to 231687cac31b
- hicexplorer_hiccomparematrices was updated to 2f74c344d0a0
- hicexplorer_hiccompartmentspolarization was updated to 536a6f0d260c
- hicexplorer_hicconvertformat was updated to 2f62a87d4017
- hicexplorer_hiccorrectmatrix was updated to c543c41377dd
- hicexplorer_hiccorrelate was updated to 5df41deff008
- hicexplorer_hicdetectloops was updated to ce8d154fc6b5
- hicexplorer_hicfindrestrictionsites was updated to 3c03ddb45833
- hicexplorer_hicfindtads was updated to 1d9b575fe97d
- hicexplorer_hicinfo was updated to de14870013da
- hicexplorer_hicmergeloops was updated to 59d3fa4c16f5
- hicexplorer_hicmergematrixbins was updated to c5280c9117f3
- hicexplorer_hicnormalize was updated to b7cf65cb8019
- hicexplorer_hicpca was updated to c435572f7cf1
- hicexplorer_hicplotaverageregions was updated to 0dff8b5011c0
- hicexplorer_hicplotdistvscounts was updated to 8c1ac76d7063
- hicexplorer_hicplotmatrix was updated to b553d14a7845
- hicexplorer_hicplotsvl was updated to 3a7752b8d2cb
- hicexplorer_hicplotviewpoint was updated to 84d4b83f092a
- hicexplorer_hicquickqc was updated to 909125ec301f
- hicexplorer_hicsummatrices was updated to 759f6bb1432f
- hicexplorer_hictransform was updated to ff11c08dc0d0
- hicexplorer_hicvalidatelocations was updated to 61754e6c156d
- schicexplorer_schicadjustmatrix was updated to 799a9fe1265c
- schicexplorer_schiccluster was updated to 36e26166034d
- schicexplorer_schicclustercompartments was updated to 0bc84d7d94d4
- schicexplorer_schicclusterminhash was updated to 68648299ffc4
- schicexplorer_schicclustersvl was updated to eeb26f378f34
- schicexplorer_schicconsensusmatrices was updated to 18bdb745b787
- schicexplorer_schiccorrectmatrices was updated to 16dda99bd733
- schicexplorer_schiccreatebulkmatrix was updated to ec29352b062f
- schicexplorer_schicdemultiplex was updated to 649c86cedcb4
- schicexplorer_schicinfo was updated to 09f8be8a6e76
- schicexplorer_schicmergematrixbins was updated to ecae4e42d40a
- schicexplorer_schicmergetoscool was updated to 6ffcffed0225
- schicexplorer_schicnormalize was updated to 7c2387e72aac
- schicexplorer_schicplotclusterprofiles was updated to 9da580a74230
- schicexplorer_schicplotconsensusmatrices was updated to 259899fbb6ae
- schicexplorer_schicqualitycontrol was updated to 5f2eacae0bb8
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