On 2020-11-28, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #249
hca_sc_utils_viz
- dropletutils_empty_drops was updated to fa662ca7ae7f
- dropletutils_read_10x was updated to ca62f52e0d7f
FASTA/FASTQ
- fasta_merge_files_and_filter_unique_sequences was updated to f546e7278f04
Send Data
- ena_upload was updated to 382518f24d6d
Get Data
- dbbuilder was updated to e9df53a75f3c
Nanopore
- flair_collapse was updated to 57dc46adf2da
- flair_correct was updated to 6927379c9ede
Quality Control
- multiqc was updated to f7985e0479b9
Species abundance
- pampa_glmcomm was updated to f0dc3958e65d
- pampa_glmsp was updated to 0778efa9eb2e
- stoc_filteringsp was updated to fd0687e91bf6
- stoc_mainglm was updated to a961be0a964f
- stoc_mainglm_group was updated to 8f953c35c787
- stoc_maketable was updated to af4987066235
- stoc_trend_indic was updated to 5c244408661f
hca_sc_scmap_tools
- scmap_get_std_output was updated to 2f63b1cd9122
- scmap_index_cell was updated to dd0b44bd359a
- scmap_index_cluster was updated to 4ff68faee6e1
- scmap_preprocess_sce was updated to 80d97bdbfc7b
- scmap_scmap_cell was updated to 65b719530dd5
- scmap_scmap_cluster was updated to a0da1d3155dd
- scmap_select_features was updated to e5aaa5bea06a
Mothur
- mothur_chop_seqs was updated to 35fd955898e0
- mothur_make_contigs was updated to 829bb93d3add
hca_sc_scanpy_tools
- anndata_ops was updated to 6aa025ea64d3
- anndata_ops was updated to c09d61ede252
- scanpy_compute_graph was updated to 087a7edb0995
- scanpy_compute_graph was updated to 2401808e20e8
- scanpy_filter_cells was updated to ba64b91ed2b9
- scanpy_filter_cells was updated to e05cafd4e2b2
- scanpy_filter_genes was updated to 083418c42b90
- scanpy_filter_genes was updated to a1698b43abeb
- scanpy_find_cluster was updated to 9e4f79e40b84
- scanpy_find_markers was updated to 9fe7e2da8fe6
- scanpy_find_variable_genes was updated to 5663eb6b965c
- scanpy_find_variable_genes was updated to 5c62f39aab8f
- scanpy_integrate_bbknn was updated to 26805c747e15
- scanpy_integrate_bbknn was updated to 3803efa11152
- scanpy_integrate_combat was updated to 0752a5c8a9da
- scanpy_integrate_combat was updated to 5c25b8a985e8
- scanpy_integrate_harmony was updated to 2cef3539f420
- scanpy_integrate_mnn was updated to dc7fa97154f1
- scanpy_integrate_mnn was updated to eb30e34367b1
- scanpy_normalise_data was updated to 463d4fa8f5ec
- scanpy_normalise_data was updated to 7852b823ad45
- scanpy_parameter_iterator was updated to ae4debc68f4a
- scanpy_parameter_iterator was updated to b9dd12ab0550
- scanpy_plot_embed was updated to a8ef4bc35839
- scanpy_plot_trajectory was updated to 0cb36b79741e
- scanpy_plot_trajectory was updated to 3a00e9e50eb8
- scanpy_read_10x was updated to 72cf1c8f5870
- scanpy_read_10x was updated to c8391a25dee3
- scanpy_regress_variable was updated to 63e18d37228d
- scanpy_regress_variable was updated to e51380afa61c
- scanpy_run_diffmap was updated to 722ba62d7bb4
- scanpy_run_dpt was updated to 730d098a9f23
- scanpy_run_dpt was updated to d49523477607
- scanpy_run_fdg was updated to 5d2c8acd2ae4
- scanpy_run_paga was updated to 211fe30d83be
- scanpy_run_pca was updated to 988edd5fa902
- scanpy_run_tsne was updated to 384cacc40611
- scanpy_run_umap was updated to 135e8cacb57e
- scanpy_run_umap was updated to abae3d11d920
- scanpy_scale_data was updated to 29a69127061f
- scanpy_scale_data was updated to 9664a6c00fd1
Mapping
- hisat2 was updated to d4b55e2beb12
hca_sc_label_analysis_tools
- ct_build_cell_ontology_dict was updated to 512b239a11ad
- ct_combine_tool_outputs was updated to 844689a7f66e
- ct_get_consensus_outputs was updated to 0917f5e09d83
- ct_get_empirical_dist was updated to 14eb5128af69
- ct_get_tool_perf_table was updated to 90d7f30478ee
- ct_get_tool_pvals was updated to 52df56743cd9
Graph/Display Data
- circos was updated to df7356989ac1
Imaging
- spyboat was updated to 76733d05d8ef
hca_sc_scpred_tools
- scpred_get_feature_space was updated to 17325882fa72
- scpred_get_std_output was updated to 598b1d9dd135
- scpred_predict_labels was updated to b869bb6d4b01
- scpred_train_model was updated to a7269f8f45aa
RNA Analysis
- deseq2 was updated to de44f8eff84a
- idr was updated to de7795890bc5
Annotation
- annotatemyids was updated to 44018dd6b447
hca_sc_seurat_tools
- seurat_dim_plot was updated to cfc3d8ee3a64
- seurat_export_cellbrowser was updated to e7d338f8c4fc
- seurat_filter_cells was updated to ebf7286c8b97
- seurat_find_clusters was updated to 8ed848ef86fd
- seurat_find_markers was updated to a1842dbe01cd
- seurat_find_neighbours was updated to ab622ffd7c7f
- seurat_find_variable_genes was updated to 051953328516
- seurat_normalise_data was updated to c5d4fce10c45
- seurat_read10x was updated to 893ea1e1eed3
- seurat_run_pca was updated to 3fd59cdcb477
- seurat_run_tsne was updated to 2d294978b152
- seurat_scale_data was updated to 4147dc085d45
GIS Data Handling
- xarray_metadata_info was updated to e8650cdf092f
- xarray_select was updated to 6baac361495b
Data Managers
- data_manager_cat was updated to 74af283d8ebd
- data_manager_dada2 was updated to 38ccd4589990
- data_manager_kallisto_index_builder was updated to 18e2dd472525
- data_manager_mash_sketch_builder was updated to 2af9137ba067
- data_manager_mash_sketch_builder was updated to ce1d5c8d5bff
- data_manager_mitos was updated to 19d9be08560c
- data_manager_primer_scheme_bedfiles was updated to 157a5c9ea72a
- data_manager_qiime_database_downloader was updated to 9e86c09a6cae
- data_manager_qiime_database_downloader was updated to cc18f0f3514c
ChemicalToolBox
- gmx_editconf was updated to 0fac8e2afc13
- gmx_em was updated to f5d979cb4b54
- gmx_energy was updated to d2f955aea23a
- gmx_makendx was updated to b3ae940ed305
- gmx_merge_topology_files was updated to 319a28774da9
- gmx_restraints was updated to 642ce5c16ae8
- gmx_setup was updated to 2c349b027a01
- gmx_sim was updated to 807aa4c9293d
- gmx_solvate was updated to ae87e7b2454c
- gmx_trj was updated to 6dcfdac2dcae
Text Manipulation
- regex_find_replace was updated to ae8c4b2488e7
Convert Formats
- msconvert was updated to 3cf310697624
Proteomics
- metaquantome_db was updated to 85b8866f06d7
- metaquantome_expand was updated to 1974224d63c2
- metaquantome_filter was updated to 99450519d727
- metaquantome_sample was updated to c7745841de24
- metaquantome_stat was updated to da986f83631b
- metaquantome_viz was updated to 944b43462104
- openms_openpepxl was updated to 40cc19c0dbd6
- openms_openpepxl was updated to a2a842b00f9c
- openms_openpepxl was updated to fc36cfd19834
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to 147aaac03456
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
NCBI Blast
- kraken2 was updated to 4a9da2b6c2e3
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