On 2021-05-11, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #273
BED
- bedtools was updated to fe5b4cb8356c
Variant Calling
- jasminesv was updated to 2b62154e39c8
Graph/Display Data
- pretext_snapshot was updated to 7a5eaa19e92f
Get Data
- sra_tools was updated to 69ebb7f46e45
Metagenomic Analysis
- bio_hansel was updated to 4deefd708943
Assembly
- colibread_lordec was updated to a32b531f66a0
Mapping
- winnowmap was updated to 44231ef8167a
Phylogenetics
- gstf_preparation was updated to 51a7a2a82902
- gstf_preparation was updated to 9c62ad7dd113
- hyphy_absrel was updated to 5f2ca10db92a
- hyphy_annotate was updated to a88848771d2d
- hyphy_bgm was updated to d88bbb287923
- hyphy_busted was updated to 70fab57f3c05
- hyphy_cfel was updated to fb833dd994f2
- hyphy_conv was updated to f6e7b5955712
- hyphy_fade was updated to 5e8d0e777033
- hyphy_fel was updated to 8276bb2adea5
- hyphy_fubar was updated to cd41e7a4d35f
- hyphy_gard was updated to 1fb98a84e86d
- hyphy_meme was updated to e0763df98352
- hyphy_prime was updated to 6d29207a32c5
- hyphy_relax was updated to a4c5dc437558
- hyphy_sm19 was updated to 36e40d93e8a3
- hyphy_strike_ambigs was updated to 4bf743518e41
- nextalign was updated to 456e4dadb905
- nextclade was updated to 0f20ed06ed6c
- usher_matutils was updated to 79e2ee4e6ebb
Proteomics
- cardinal_classification was updated to ece627528a78
- cardinal_combine was updated to a8ecb52264c4
- openms_maraclusteradapter was updated to 2be8c63444db
- openms_openpepxl was updated to a2a842b00f9c
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
Machine Learning
- keras_batch_models was updated to 0dc3027df8f4
- keras_batch_models was updated to 4a5266c96889
- keras_model_builder was updated to 053570bac5ea
- keras_model_builder was updated to 9b6faa256f15
- keras_model_config was updated to 0c933465d70e
- keras_train_and_eval was updated to ead8f1822587
- ml_visualization_ex was updated to 4a229a7ad638
- model_prediction was updated to 60c726f5cc5e
- sklearn_build_pipeline was updated to 0c74d3164ac8
- sklearn_clf_metrics was updated to c8547d3993c0
- sklearn_data_preprocess was updated to 1bef885255e0
- sklearn_discriminant_classifier was updated to e76f6dfea5c9
- sklearn_ensemble was updated to 4ecc0ce9d0a2
- sklearn_estimator_attributes was updated to c9ddd20d25d0
- sklearn_feature_selection was updated to 5773e98921fc
- sklearn_fitted_model_eval was updated to 61fb99c55558
- sklearn_generalized_linear was updated to 913bf1c4c7bb
- sklearn_lightgbm was updated to c48ffc96fe79
- sklearn_model_fit was updated to 17999807dc1b
- sklearn_model_validation was updated to 4b359039f09f
- sklearn_nn_classifier was updated to 823ecc0bce45
- sklearn_numeric_clustering was updated to 73e7f1c76ece
- sklearn_pairwise_metrics was updated to 09bfbef3dd90
- sklearn_pca was updated to 24c1cc2dd4a4
- sklearn_regression_metrics was updated to 70c5a9127f99
- sklearn_sample_generator was updated to 0f460421b212
- sklearn_searchcv was updated to a36a45cb96fa
- sklearn_stacking_ensemble_models was updated to b8378d4791b7
- sklearn_svm_classifier was updated to 14fa42b095c4
- sklearn_to_categorical was updated to f93f0cdbaf18
- sklearn_train_test_eval was updated to caf7d2b71a48
- sklearn_train_test_split was updated to 3312fb686ffb
Statistics
- scipy_sparse was updated to 92e09b827300
hca_sc_scanpy_tools
- anndata_ops was updated to 53a251c6d991
- scanpy_compute_graph was updated to 5ec3b715809c
- scanpy_filter_cells was updated to 7fd39eb52f38
- scanpy_filter_genes was updated to d82d999fa716
- scanpy_find_cluster was updated to 621d7d7a605f
- scanpy_find_markers was updated to 7042ce140caa
- scanpy_find_variable_genes was updated to ae467daae2f7
- scanpy_integrate_bbknn was updated to 3d9322fd5716
- scanpy_integrate_combat was updated to 7a573108f5f4
- scanpy_integrate_harmony was updated to 1d92cea73607
- scanpy_integrate_mnn was updated to 5bb009f95e03
- scanpy_normalise_data was updated to 3a4564b9d685
- scanpy_parameter_iterator was updated to 9dbd170bec14
- scanpy_plot_embed was updated to 9fafbfcdee0d
- scanpy_plot_trajectory was updated to 1bc31f0f3aea
- scanpy_read_10x was updated to 3931e8e8d678
- scanpy_regress_variable was updated to 59d3ce1cfaa8
- scanpy_run_diffmap was updated to 5603d3e55053
- scanpy_run_dpt was updated to b2b2211da550
- scanpy_run_fdg was updated to 932e99b4dc5f
- scanpy_run_paga was updated to f49758aa29e5
- scanpy_run_pca was updated to 04bdc69f00d7
- scanpy_run_tsne was updated to fe727a9496ea
- scanpy_run_umap was updated to e31937baa330
- scanpy_scale_data was updated to 22f2957da902
Species abundance
- pampa_communitymetrics was updated to 2cd0a5a321c2
- pampa_glmcomm was updated to 8db02073b671
- pampa_glmsp was updated to c12897ba5f83
- pampa_plotglm was updated to 5ddca052c314
- pampa_presabs was updated to 07b081730994
DNA Metabarcoding
- obi_annotate was updated to f82cefbbcea5
- obi_clean was updated to 12baadec7809
- obi_convert was updated to 374fd9feb032
- obi_grep was updated to fe7ec8a3d35e
- obi_illumina_pairend was updated to 83fbdf93d51e
- obi_ngsfilter was updated to 3bf57dadf7cd
- obi_sort was updated to e614dcabd870
- obi_stat was updated to 723a93febe89
- obi_tab was updated to 5f7003111e32
- obi_uniq was updated to ec215ed98831
RAD-seq
- stacks2_clonefilter was updated to 289b7d6b69a4
- stacks2_cstacks was updated to c207119ba5f6
- stacks2_denovomap was updated to ad5ab22ffe24
- stacks2_gstacks was updated to eb784fa07f80
- stacks2_kmerfilter was updated to 1544278c272e
- stacks2_populations was updated to 887cf585cafc
- stacks2_procrad was updated to e897c74a48bb
- stacks2_refmap was updated to 4f65e343ecdf
- stacks2_shortreads was updated to c5d7050e4ad7
- stacks2_sstacks was updated to cd034465d4a4
- stacks2_tsv2bam was updated to a9c34a289493
- stacks2_ustacks was updated to cfb504394ae1
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