On 2022-12-06, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #361

Graph/Display Data

• bandage was updated to ddddce450736
• ggplot2_heatmap was updated to da4c086cff5b
• ggplot2_histogram was updated to 11869c5becd8
• ggplot2_pca was updated to 7f2ef7216cf8
• ggplot2_point was updated to d0fc8b746d57
• ggplot2_violin was updated to 9c52a8130729

Compute indicators for turnover boulders fields

• cb_dissim was updated to 7e6cc3da1189
• cb_ivr was updated to 8c6142630659
• champ_blocs was updated to 9ed95b4a273c

Proteomics

• openms_accuratemasssearch was updated to 532cf3ddcc91
• openms_assaygeneratormetabo was updated to 83f5e5c1209c
• openms_baselinefilter was updated to ddbae9eb797e
• openms_clustermasstraces was updated to 10c41ad01df5
• openms_clustermasstracesbyprecursor was updated to 75480fff2586
• openms_cometadapter was updated to e75929491905
• openms_compnovo was updated to cd9449dbe4e4
• openms_compnovocid was updated to 123ea5520652
• openms_consensusid was updated to f4be248c3d47
• openms_consensusmapnormalizer was updated to d9802c463a2f
• openms_cruxadapter was updated to a915cadc2f07
• openms_cvinspector was updated to f95704542c63
• openms_databasefilter was updated to 0878a55de9e7
• openms_decharger was updated to 566029692c59
• openms_decoydatabase was updated to 25529df60a81
• openms_demeanderize was updated to 2425a98560f5
• openms_digestor was updated to 13399dc8f687
• openms_dtaextractor was updated to 79706b7647c3
• openms_eicextractor was updated to f253d41d9170
• openms_epifany was updated to f3096a586de8
• openms_erpairfinder was updated to d6ef464ff66b
• openms_externalcalibration was updated to 1168fee85066
• openms_falsediscoveryrate was updated to 6ccbf9a2072c
• openms_featurefindercentroided was updated to 1a709ba66f2f
• openms_featurefinderidentification was updated to 5dc928c83939
• openms_featurefinderisotopewavelet was updated to 832c471f0d31
• openms_featurefindermetabo was updated to 2451315543f9
• openms_featurefindermetaboident was updated to ae20e8a6d309
• openms_featurefindermrm was updated to 646ebe78d904
• openms_featurefindermultiplex was updated to 9876bda3ec53
• openms_featurelinkerlabeled was updated to d9ebdc2e55fe
• openms_featurelinkerunlabeled was updated to b46263c3ee99
• openms_featurelinkerunlabeledkd was updated to 718c0e2904cb
• openms_featurelinkerunlabeledqt was updated to aa8658367608
• openms_ffeval was updated to 71b4a047afe5
• openms_fidoadapter was updated to 1595601708ec
• openms_fileconverter was updated to 2a93a25f0599
• openms_filefilter was updated to fe4e4587d265
• openms_fileinfo was updated to 4af67edd5aef
• openms_filemerger was updated to b2fc8da99bcc
• openms_fuzzydiff was updated to c940abd8d622
• openms_gnpsexport was updated to 2da14ae3844a
• openms_highresprecursormasscorrector was updated to d3546bb9fd8e
• openms_idconflictresolver was updated to ca1740533b59
• openms_idextractor was updated to 589bf635f424
• openms_idfileconverter was updated to 7d0eb300f360
• openms_idfilter was updated to a5d785af0ad8
• openms_idmapper was updated to adca857b4884
• openms_idmassaccuracy was updated to 585f8235da7e
• openms_idmerger was updated to 34e7afee141d
• openms_idposteriorerrorprobability was updated to 986e03d3201e
• openms_idripper was updated to 7960e660446e
• openms_idrtcalibration was updated to 7ff821b34ebc
• openms_idscoreswitcher was updated to 4204882495f2
• openms_idsplitter was updated to 64e35457d86e
• openms_internalcalibration was updated to f49a58e03ada
• openms_isobaricanalyzer was updated to 130ffca1ec5b
• openms_labeledeval was updated to 45b7070b3366
• openms_luciphoradapter was updated to bf2bf60c8af2
• openms_mapaligneridentification was updated to 8434f070e939
• openms_mapalignerposeclustering was updated to 246847b3a188
• openms_mapalignerspectrum was updated to 085863ba8f0e
• openms_mapalignertreeguided was updated to 502c7e321ba5
• openms_mapnormalizer was updated to 35acd0d34d48
• openms_maprttransformer was updated to aec26bf377fb
• openms_mapstatistics was updated to 045995dc36bc
• openms_maraclusteradapter was updated to f7195ee7e18d
• openms_mascotadapter was updated to 27e308170367
• openms_mascotadapteronline was updated to 3f3d33920f90
• openms_masscalculator was updated to bcd50cd4fe42
• openms_masstraceextractor was updated to 29d893e855c6
• openms_metaboliteadductdecharger was updated to 7e7e6a5b9c01
• openms_metabolitespectralmatcher was updated to 75ccdbc2475d
• openms_metaprosip was updated to 819ed5aae76f
• openms_mrmmapper was updated to 9a6f6a0ed604
• openms_mrmpairfinder was updated to bd57c94d50fb
• openms_mrmtransitiongrouppicker was updated to 78796b50831b
• openms_msfraggeradapter was updated to 9866e1170611
• openms_msgfplusadapter was updated to f5ec766d80cf
• openms_mssimulator was updated to 9e6a371d539b
• openms_msstatsconverter was updated to e3fb590554fd
• openms_multiplexresolver was updated to 021fdb80f204
• openms_myrimatchadapter was updated to 2253c491c157
• openms_mzmlsplitter was updated to 095b7d42bfc2
• openms_mztabexporter was updated to 2735db4dd8d9
• openms_noisefiltergaussian was updated to 47982606f542
• openms_noisefiltersgolay was updated to cf86c9091cb3
• openms_novoradapter was updated to 34dda034b019
• openms_nucleicacidsearchengine was updated to 92864c71ac6a
• openms_omssaadapter was updated to 1672e6be33d3
• openms_openpepxl was updated to 4d2b77fd7a28
• openms_openpepxl was updated to a2a842b00f9c
• openms_openpepxllf was updated to 8bfa9d787dc7
• openms_openswathanalyzer was updated to 08488066d588
• openms_openswathassaygenerator was updated to de7a553552a6
• openms_openswathchromatogramextractor was updated to f78d734b7c01
• openms_openswathconfidencescoring was updated to c1809c05ae8c
• openms_openswathdecoygenerator was updated to 496cf619e311
• openms_openswathfeaturexmltotsv was updated to 844c32358954
• openms_openswathfilesplitter was updated to 4bb198c0bd3e
• openms_openswathmzmlfilecacher was updated to f82b320ceb90
• openms_openswathrewritetofeaturexml was updated to b956337a7473
• openms_openswathrtnormalizer was updated to d31426ef20f6
• openms_openswathworkflow was updated to 4a7b96835140
• openms_peakpickerhires was updated to 6b01678ec2fc
• openms_peakpickeriterative was updated to 9547baeca6a1
• openms_peakpickerwavelet was updated to 2077efa205de
• openms_pepnovoadapter was updated to 533859c7e75f
• openms_peptideindexer was updated to d6aca689dd48
• openms_percolatoradapter was updated to 016964c597f5
• openms_percolatoradapter was updated to 0fc9ae55bcfc
• openms_percolatoradapter was updated to e7881a82b56d
• openms_phosphoscoring was updated to 996ca7c1d45e
• openms_precursorionselector was updated to 1cae2aac2260
• openms_precursormasscorrector was updated to 35123b3fe2f2
• openms_proteininference was updated to 98adda3af74a
• openms_proteinquantifier was updated to d426affe977c
• openms_proteinresolver was updated to 851f7c252d66
• openms_psmfeatureextractor was updated to 63fea23042c4
• openms_ptmodel was updated to 3e9d04994968
• openms_qccalculator was updated to d0607dfea8fa
• openms_qcembedder was updated to f9e709333234
• openms_qcexporter was updated to 838b8e375587
• openms_qcextractor was updated to c8d22d876c75
• openms_qcimporter was updated to d29c4c46e057
• openms_qcmerger was updated to fbf1dfad22ce
• openms_qcshrinker was updated to a4b5b3c5df07
• openms_qualitycontrol was updated to bd210b86fb5d
• openms_rnadigestor was updated to c951784e4967
• openms_rnamasscalculator was updated to cb0f5beef55f
• openms_rnpxlsearch was updated to 0f97ea098da0
• openms_rnpxlxicfilter was updated to 81d5ef72ef9d
• openms_rtevaluation was updated to 062fcf33f18d
• openms_rtmodel was updated to 0fc4aa40badb
• openms_seedlistgenerator was updated to f3c72f54b9eb
• openms_semanticvalidator was updated to ff9d0d1c2c1c
• openms_sequencecoveragecalculator was updated to 3fe59b1a1370
• openms_simplesearchengine was updated to da78f97a6dda
• openms_siriusadapter was updated to 0c27444604dd
• openms_speclibcreator was updated to da1fa8ce2d96
• openms_speclibsearcher was updated to 3aa3b656e624
• openms_spectrafilterbernnorm was updated to 1a03426f3c8d
• openms_spectrafiltermarkermower was updated to 5b672697da3f
• openms_spectrafilternlargest was updated to 948d3b4988e4
• openms_spectrafilternormalizer was updated to e4f9ce9d90ad
• openms_spectrafilterparentpeakmower was updated to 5694ec584f4c
• openms_spectrafilterscaler was updated to 8de40ceef18b
• openms_spectrafiltersqrtmower was updated to 50aca42393c4
• openms_spectrafilterthresholdmower was updated to 1db101600feb
• openms_spectrafilterwindowmower was updated to 2876320b80a4
• openms_spectramerger was updated to 4333c513b7a1
• openms_spectrastsearchadapter was updated to 4d189842ebfc
• openms_svmtheoreticalspectrumgeneratortrainer was updated to 3c5de1c6c08a
• openms_targetedfileconverter was updated to 9c70a651a53e
• openms_textexporter was updated to 1b03536aa3c9
• openms_ticcalculator was updated to d623ad21ca59
• openms_tofcalibration was updated to 9f0e189d093c
• openms_transformationevaluation was updated to 76ae6a5181b5
• openms_xfdr was updated to 81402a5e4173
• openms_xfdr was updated to 87dda030bc92
• openms_xfdr was updated to 9a6e3bb0f358
• openms_xmlvalidator was updated to f036e8cf1a55
• openms_xtandemadapter was updated to 5c2a97a234d6

Assembly

• necat was updated to 6ee7eb5821f0

Get Data

• ensembl_get_genetree was updated to 0602dcf02768
• ncbi_datasets was updated to d78faac2c6ef
• pysradb_search was updated to f63cf0adfd87

HiCExplorer

• hicexplorer_hicbuildmatrix was updated to c657edbea349

Machine Learning

• virhunter was updated to 9b12bc1b1e2c

Metagenomic Analysis

• lotus2 was updated to 1d660ee0b1c8
• ampvis2_alpha_diversity was updated to 6b8580e02e99
• ampvis2_boxplot was updated to 0c069fc2471c
• ampvis2_core was updated to de6156c8ef16
• ampvis2_export_fasta was updated to e10b5eebd415
• ampvis2_frequency was updated to 0feab98f9577
• ampvis2_heatmap was updated to 1979fdd0914f
• ampvis2_load was updated to dc0840e31406
• ampvis2_merge_ampvis2 was updated to 028ba7c0b400
• ampvis2_mergereplicates was updated to 0e10df6f37c6
• ampvis2_octave was updated to 7b81221e7925
• ampvis2_ordinate was updated to be1918c80d9f
• ampvis2_otu_network was updated to 354d645455cd
• ampvis2_rankabundance was updated to 2c21c267391c
• ampvis2_rarecurve was updated to aeca454c398e
• ampvis2_setmetadata was updated to e7afc79b841e
• ampvis2_subset_samples was updated to 14b38ec15fe9
• ampvis2_subset_taxa was updated to 70a98af91147
• ampvis2_timeseries was updated to 77d2f88d8716
• ampvis2_venn was updated to 62c6d4c55190
• customize_metaphlan_database was updated to 892a0629e2ed
• extract_metaphlan_database was updated to b4c750fe0fe3
• merge_metaphlan_tables was updated to 27250f92a01a
• metaphlan was updated to 6dee4abadccb

RNA Analysis

• deseq2 was updated to 9a616afdbda5
• rseqc was updated to 1421603cc95b

Single-cell

• raceid_clustering was updated to 528a43b1cbcf