On 2023-02-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #374
Graph/Display Data
- ggplot2_point was updated to 3b12bf9b4b87
- ggplot2_violin was updated to d8305f18060e
- pygenometracks was updated to 14e7c35f3d00
Text Manipulation
- regex_find_replace was updated to 503bcd6ebe4b
Biodiversity data exploration
- obisindicators was updated to 4e7c1fb5e894
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
Get Data
- pysradb_search was updated to b91e1e70f3a1
- sra_tools was updated to 4df8de2d0e48
Mapping
- bbtools_bbmap was updated to 9ed6579f52f3
- rgrnastar was updated to 4df95e2d7f61
- rna_starsolo was updated to 1cd2511a396e
RNA Analysis
- featurecounts was updated to a56fbe2d6ba7
- rseqc was updated to 473382134e56
Proteomics
- mqppep_anova was updated to 514afed1f40d
- mqppep_preproc was updated to b889e05ce77d
- msstats was updated to b7034eff0db1
- msstatstmt was updated to bd1535813cfe
- openms_openpepxl was updated to 40cc19c0dbd6
- openms_openpepxl was updated to a2a842b00f9c
- openms_openpepxl was updated to fc36cfd19834
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
Assembly
- hifiasm was updated to da9d8bf98802
- cactus_export was updated to fc2e49f91e52
- hifiasm_meta was updated to fa35f1106d3e
- getorganelle was updated to 06bcf65179fb
Metagenomic Analysis
- coverm_contig was updated to 688a777e1b19
- coverm_genome was updated to a671907f96fe
- humann was updated to 2cd76b089570
- humann_associate was updated to 5ae955d5bd2b
- humann_barplot was updated to 0cd140dfdecf
- humann_join_tables was updated to fd7ebf31b030
- humann_reduce_table was updated to d122106c317f
- humann_regroup_table was updated to 79706f10d680
- humann_rename_table was updated to 172920f67a84
- humann_renorm_table was updated to d7e9a3c41657
- humann_rna_dna_norm was updated to 44a27841ca50
- humann_split_stratified_table was updated to 64bc7acc22a9
- humann_split_table was updated to 44cacbe09bfc
- humann_strain_profiler was updated to 18481a7c3676
- humann_unpack_pathways was updated to 080ea153677c
- kleborate was updated to 374b2e9ade86
- krakentools_alpha_diversity was updated to 8ac5d5c9a5e4
- krakentools_beta_diversity was updated to 4b32f3b4a851
- krakentools_kreport2krona was updated to 773615269d71
- plasflow was updated to ea270d0ad0e6
hca_sc_scanpy_tools
- anndata_ops was updated to 825dfd66e3fb
- scanpy_compute_graph was updated to 6417cccad133
- scanpy_filter_cells was updated to e9283529cba1
- scanpy_filter_genes was updated to 474a69c47184
- scanpy_find_cluster was updated to 2ccd9f9e2cd0
- scanpy_find_markers was updated to 81c34e67f262
- scanpy_find_variable_genes was updated to 2861ca3bfe4d
- scanpy_integrate_bbknn was updated to 1fb88fd7dce5
- scanpy_integrate_combat was updated to 3c2ff50cef4a
- scanpy_integrate_harmony was updated to 3111bcf039dd
- scanpy_integrate_mnn was updated to 3ba9371733a2
- scanpy_multiplet_scrublet was updated to b8126b3bf5d0
- scanpy_normalise_data was updated to 6b97ffba31da
- scanpy_parameter_iterator was updated to a8c73996ac50
- scanpy_plot_embed was updated to 35f6611fb8c3
- scanpy_plot_scrublet was updated to 2d3b13bb704a
- scanpy_plot_trajectory was updated to f489ccdd423c
- scanpy_read_10x was updated to 9afcfcd1d215
- scanpy_regress_variable was updated to 1200b55768ce
- scanpy_run_diffmap was updated to e2ca1846080f
- scanpy_run_dpt was updated to 2e06dabb3f2f
- scanpy_run_fdg was updated to 7c6581b57ad4
- scanpy_run_paga was updated to 4e7d55438238
- scanpy_run_pca was updated to 59028945c857
- scanpy_run_tsne was updated to 181d61d2f3cd
- scanpy_run_umap was updated to bd4a244faeb8
- scanpy_scale_data was updated to f86b2c3bc459
Annotation
- annotatemyids was updated to 133f36c29579
- bakta was updated to 865ece5ca178
- funannotate_annotate was updated to 9f2455341fac
- funannotate_clean was updated to 73428a792541
- funannotate_compare was updated to 494f0bb4a993
- funannotate_predict was updated to 7abc5f6dd595
- funannotate_sort was updated to d3af38b9c7e1
- integron_finder was updated to 4768f7f8e93f
- tbprofiler was updated to 2c68b0c38785
Convert Formats
- biom_convert was updated to 72ed72122deb
FASTA/FASTQ
- bbtools_bbduk was updated to 425dab0e057b
HiCExplorer
- hicexplorer_hicmergeloops was updated to baefc6a3f92a
- hicexplorer_hicnormalize was updated to 7f7139b8a671
Nanopore
- nanoplot was updated to 0f1c34698076
Picard
- picard was updated to 585027e65f3b
SAM/BAM
- bamtools_split was updated to 96c9315b0e29
Variant Calling
- bbtools_callvariants was updated to 8eace8923202
- beagle was updated to f75bf16ac901
Virology
- ivar_trim was updated to bcaa0d571ce2
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
- data_manager_humann_database_downloader was updated to fea85c467896
Peak Calling
- peakachu was updated to 940b1d632f4d
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