On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411
Metabolomics
- dimet_abundance_plot was updated to c9040bdb918c
- dimet_differential_analysis was updated to c46d33411495
- dimet_differential_multigroup_analysis was updated to e88cf5618b40
- dimet_enrichment_plot was updated to 254408bfc5c0
- dimet_isotopologues_plot was updated to a3349c105bd0
- dimet_metabologram was updated to a7d3e880e74c
- dimet_pca_analysis was updated to 04d213632103
- dimet_pca_plot was updated to 952808ffa842
- dimet_timecourse_analysis was updated to cb8c4ae59da9
- biotransformer was updated to e5fcba090b10
- matchms_convert was updated to d4609fbf8ca3
- matchms_filtering was updated to 13de8005adba
- matchms_fingerprint_similarity was updated to df85b26201d1
- matchms_formatter was updated to ae45992f969e
- matchms_metadata_export was updated to 7504a8f93699
- matchms_metadata_match was updated to b5b360897004
- matchms_networking was updated to 9982b85ff4e7
- matchms_similarity was updated to 872d8040f713
- matchms_spectral_similarity was updated to 3f96c93f8566
- matchms_split was updated to 97be845e45c2
- msmetaenhancer was updated to 3e2cb0bc6959
- ramclustr was updated to 09cabbc3d12d
- ramclustr_define_experiment was updated to 7bbdcce50541
- recetox_aplcms_align_features was updated to 2b6bfa234d8b
- recetox_aplcms_compute_clusters was updated to 550667ce03f1
- recetox_aplcms_compute_template was updated to e2dc815e1b2c
- recetox_aplcms_correct_time was updated to d69ec1171d71
- recetox_aplcms_generate_feature_table was updated to 32b66fb6a6a0
- recetox_aplcms_merge_known_table was updated to 8ecb609cc265
- recetox_aplcms_recover_weaker_signals was updated to a9bb2ccc53de
- recetox_aplcms_remove_noise was updated to 12bf74dd09f1
- recetox_xmsannotator_advanced was updated to 50ac7359ffe7
- riassigner was updated to 8c5e65adf694
- rmassbank was updated to c1a9c990d4b0
- waveica was updated to dbbedb14b44c
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
Proteomics
- msstatstmt was updated to fd3dc69b78ff
- openms_openpepxl was updated to a2a842b00f9c
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
Annotation
- cpt_annotation_table was updated to 6998c2570145
- cpt_gbk_renumber was updated to 8cac332dbc77
- cpt_genome_editor was updated to 78ce8a1a8fd1
- cpt_gff_extract_seq was updated to ab40380424c9
- cpt_gff_rebase was updated to 4f4b413056f6
- cpt_intersect_adjacent was updated to 7e393668b4b9
- cpt_intron_detection was updated to 0a98d5259ef0
- cpt_lipory was updated to b79df4966ebb
- cpt_phageqc_annotations was updated to c3140b08d703
- cpt_require_shine was updated to a6dc48930318
- braker3 was updated to bd103884a09c
Phylogenetics
- cpt_related_genomes_nuc was updated to 5a5fe0a6f78d
- cpt_related_genomes_prot was updated to ebcc87a27f9c
- cpt_xmfa_to_table was updated to 06d8e28d0bd7
Convert Formats
- cpt_gbk_to_5col was updated to 1bdd481d5c25
- cpt_gbk_to_gff was updated to bb6332a85aa6
- cpt_gff_split was updated to 8bd03ba8510a
- cpt_gff_to_gbk was updated to 35a6c466e270
Graph/Display Data
- cpt_linear_genome_plot was updated to e923c686ead9
Assembly
- hifiasm was updated to 60024a528cbd
- hapog was updated to 7d56a813fd24
- shovill was updated to ee17a294d3a3
Mothur
- mothur_unifrac_unweighted was updated to 6a622b34394a
RNA Analysis
- edger was updated to 070900306913
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
hca_sc_scanpy_tools
- anndata_ops was updated to 2e8022f1923c
- scanpy_compute_graph was updated to f776e3ed3c03
- scanpy_filter_cells was updated to 356fa6c27341
- scanpy_filter_genes was updated to 9a36525a8425
- scanpy_find_cluster was updated to d19920419c78
- scanpy_find_markers was updated to f0f78d29130f
- scanpy_find_variable_genes was updated to 273faaa2bd69
- scanpy_integrate_bbknn was updated to 12fc7e093094
- scanpy_integrate_combat was updated to c6611adc8f4a
- scanpy_integrate_harmony was updated to 18e01a7c55c6
- scanpy_integrate_mnn was updated to e9788746e0f6
- scanpy_multiplet_scrublet was updated to fadc4fbf8025
- scanpy_normalise_data was updated to 4bbb2179521c
- scanpy_parameter_iterator was updated to 99301e5feddc
- scanpy_plot_embed was updated to bfb4d298d75f
- scanpy_plot_scrublet was updated to 4276a6dea8d1
- scanpy_plot_trajectory was updated to 9d746af31fe8
- scanpy_read_10x was updated to af6ecb5adcc1
- scanpy_regress_variable was updated to bd65279c7ddc
- scanpy_run_diffmap was updated to afec1d52b87d
- scanpy_run_dpt was updated to 2f569aa8c920
- scanpy_run_fdg was updated to cef0ddd01875
- scanpy_run_paga was updated to 6b7a5d15a89b
- scanpy_run_pca was updated to f0eecf608220
- scanpy_run_tsne was updated to 64cd33540fee
- scanpy_run_umap was updated to 9984f48961d0
- scanpy_scale_data was updated to bf30bd6355da
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