On 2023-10-29, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #413
Metabolomics
- mzmine_batch was updated to 02e802817d48
- matchms_convert was updated to c5ed6bfcd806
- matchms_filtering was updated to 039e7ab31836
- matchms_fingerprint_similarity was updated to 79accd21387c
- matchms_formatter was updated to 1e58bf51a0e5
- matchms_metadata_export was updated to 73c902331bbc
- matchms_metadata_match was updated to be20e19c57e8
- matchms_networking was updated to d8e937f335b8
- matchms_spectral_similarity was updated to 54b6775010e0
- matchms_split was updated to ffe46a9b1124
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
Get Data
- query_impc was updated to d319dc5f3ea8
- sra_tools was updated to 6591f049cf7e
Peak Calling
- macs2 was updated to 86e2413cf3f8
Proteomics
- openms_openpepxl was updated to a2a842b00f9c
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
- pepquery2_index was updated to 0f0095bde898
- pepquery2_show_sets was updated to 8671cf7c1671
Astronomy
- astronomical_archives was updated to 667fc28d803c
Annotation
- braker3 was updated to bbe51a1c2b6b
- amrfinderplus was updated to 2fa74a3f6670
- funannotate_annotate was updated to b6b5cd37f2a2
- funannotate_clean was updated to 0ffe5be70caf
- funannotate_compare was updated to 5a5ae61da69c
- funannotate_predict was updated to d6c7106b7b2e
- funannotate_sort was updated to 54961e026fe4
Assembly
- hifiasm was updated to 41cea2aa2dce
Convert Formats
- biom_convert was updated to a4db66553a61
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to 01c37e54e86e
- hicexplorer_chicdifferentialtest was updated to 9d42a6133690
- hicexplorer_chicexportdata was updated to 23b8d6b8960c
- hicexplorer_chicplotviewpoint was updated to 013e53ccc7ac
- hicexplorer_chicqualitycontrol was updated to b892fa1fcaec
- hicexplorer_chicsignificantinteractions was updated to 640e0e45518a
- hicexplorer_chicviewpoint was updated to f881c94fb3b3
- hicexplorer_chicviewpointbackgroundmodel was updated to 9d02f1819e81
- hicexplorer_hicadjustmatrix was updated to 2dccb6bb0add
- hicexplorer_hicaggregatecontacts was updated to f0216498a666
- hicexplorer_hicaverageregions was updated to c72fa6cb8817
- hicexplorer_hicbuildmatrix was updated to ed2cca6b5de4
- hicexplorer_hiccomparematrices was updated to 3ee5332bf57c
- hicexplorer_hiccompartmentspolarization was updated to 3a6a5381db36
- hicexplorer_hicconvertformat was updated to c0737631eea1
- hicexplorer_hiccorrectmatrix was updated to ea19190ce5e0
- hicexplorer_hiccorrelate was updated to 2b4d6a8dab36
- hicexplorer_hicdetectloops was updated to 0410b6aada45
- hicexplorer_hicdifferentialtad was updated to 77d8e0fd162a
- hicexplorer_hicfindrestrictionsites was updated to 6c5097f6d41e
- hicexplorer_hicfindtads was updated to ec4b948dc6f0
- hicexplorer_hichyperoptdetectloops was updated to 7f7c6ead2d0d
- hicexplorer_hicinfo was updated to e4f8fceab96a
- hicexplorer_hicinterintratad was updated to 55b013e59018
- hicexplorer_hicmergedomains was updated to b376ef118807
- hicexplorer_hicmergeloops was updated to 1511a8ebe906
- hicexplorer_hicmergematrixbins was updated to 977dc15add20
- hicexplorer_hicnormalize was updated to 6d042c96aceb
- hicexplorer_hicpca was updated to 77919cc3618e
- hicexplorer_hicplotaverageregions was updated to ea5d67ec94ab
- hicexplorer_hicplotdistvscounts was updated to 6326cd29c1c3
- hicexplorer_hicplotmatrix was updated to b63363075c2e
- hicexplorer_hicplotsvl was updated to b4e780e93c91
- hicexplorer_hicplotviewpoint was updated to 58de3c7c8e89
- hicexplorer_hicquickqc was updated to 21d859ad4502
- hicexplorer_hicsummatrices was updated to 36dfa2825a59
- hicexplorer_hictadclassifier was updated to 887d203233e5
- hicexplorer_hictraintadclassifier was updated to 1ff19476c5a5
- hicexplorer_hictransform was updated to f36828ebdc54
- hicexplorer_hicvalidatelocations was updated to 1d201e8378b3
Metagenomic Analysis
- lotus2 was updated to fa84bba02a62
- last was updated to eca7ac1eb423
- polypolish was updated to bd2a15dbcea1
Multiple Alignments
- maf_stats was updated to 87c1c223c704
NCBI Blast
- magicblast was updated to ce86aafd8494
Nanopore
- m6anet was updated to 40f186d91e67
Phylogenetics
- phyml was updated to 7157a5b34a68
RNA Analysis
- arriba was updated to 01ccd366690d
- arriba_draw_fusions was updated to cf01dd6c6b1f
- arriba_get_filters was updated to 703a2cb3fb38
- ribowaltz_plot was updated to e25d81465c23
- ribowaltz_process was updated to 042cab870a39
Send Data
- ena_upload was updated to 480d9e9d156b
Single-cell
- baredsc_1d was updated to 4fff5a293013
- baredsc_2d was updated to aa4a6f0916b4
- baredsc_combine_1d was updated to 050cf43887d3
- baredsc_combine_2d was updated to ae969fdb8442
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
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