On 2024-02-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #432
Data and Metadata Management
- taxo_cov_template was updated to 2af7401f13e0
- taxo_cov_template was updated to 9507334a3303
Get Data
- iabiodiv_smartbiodiv_med_environ was updated to f82f266381be
QIIME 2
- qiime2__alignment__mafft was updated to a0a48c15c573
- qiime2__alignment__mafft_add was updated to 442d1a046fa6
- qiime2__alignment__mask was updated to e8bee857dc0d
- qiime2__composition__add_pseudocount was updated to f92a9f40c7e1
- qiime2__composition__ancom was updated to e3a9e7cb7b77
- qiime2__composition__ancombc was updated to fe99db171ce5
- qiime2__composition__tabulate was updated to 54caf7f5c410
- qiime2__cutadapt__demux_paired was updated to c6a8822e19f2
- qiime2__cutadapt__demux_single was updated to d8851a5b9360
- qiime2__cutadapt__trim_paired was updated to b7fc07bacdb2
- qiime2__cutadapt__trim_single was updated to 42cd76be2cbf
- qiime2__dada2__denoise_ccs was updated to d777f76179b6
- qiime2__dada2__denoise_paired was updated to 06bacd08bb47
- qiime2__dada2__denoise_pyro was updated to 377a0bd6edd4
- qiime2__dada2__denoise_single was updated to e7812ca89033
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_other was updated to 61ee71aacf1c
- qiime2__deblur__visualize_stats was updated to 0be892a57bfe
- qiime2__demux__emp_paired was updated to 551e9187951c
- qiime2__demux__emp_single was updated to 75b07a996ac0
- qiime2__demux__filter_samples was updated to 0e5d4dc5c23e
- qiime2__demux__subsample_paired was updated to f79287ee143e
- qiime2__demux__subsample_single was updated to 6c2c8696456f
- qiime2__demux__summarize was updated to d8a9f74f1a6d
- qiime2__diversity__adonis was updated to 82f9bc0feff3
- qiime2__diversity__alpha was updated to 97e9b0b0aeae
- qiime2__diversity__alpha_correlation was updated to 5850f79a2b9f
- qiime2__diversity__alpha_group_significance was updated to b7b5dc5a067b
- qiime2__diversity__alpha_phylogenetic was updated to fbf59d034371
- qiime2__diversity__alpha_rarefaction was updated to 97cb20f77d50
- qiime2__diversity__beta was updated to f5026cf3e156
- qiime2__diversity__beta_correlation was updated to ea97592533bb
- qiime2__diversity__beta_group_significance was updated to 2df83b20af3f
- qiime2__diversity__beta_phylogenetic was updated to 26534bb91445
- qiime2__diversity__beta_rarefaction was updated to a5b96ea48d79
- qiime2__diversity__bioenv was updated to 0fb37e0413d6
- qiime2__diversity__core_metrics was updated to 9602903a0fbd
- qiime2__diversity__core_metrics_phylogenetic was updated to 9d29f6a334e5
- qiime2__diversity__filter_distance_matrix was updated to a53b321e6821
- qiime2__diversity__mantel was updated to 196948449667
- qiime2__diversity__pcoa was updated to 9f6dfa1155c4
- qiime2__diversity__pcoa_biplot was updated to 0b649d0fe617
- qiime2__diversity__procrustes_analysis was updated to fe144b0df710
- qiime2__diversity__tsne was updated to 70d6cf1e8db0
- qiime2__diversity__umap was updated to 21c17986c882
- qiime2__diversity_lib__alpha_passthrough was updated to 98ae2621b590
- qiime2__diversity_lib__beta_passthrough was updated to 38a55b074008
- qiime2__diversity_lib__beta_phylogenetic_meta_passthrough was updated to 1fe13f74d48a
- qiime2__diversity_lib__beta_phylogenetic_passthrough was updated to fcbeb4dc4b81
- qiime2__diversity_lib__bray_curtis was updated to a1422e558f73
- qiime2__diversity_lib__faith_pd was updated to 1142e83c6ae3
- qiime2__diversity_lib__jaccard was updated to cf5fc36069f5
- qiime2__diversity_lib__observed_features was updated to f740751c2439
- qiime2__diversity_lib__pielou_evenness was updated to 02d2141ff634
- qiime2__diversity_lib__shannon_entropy was updated to 63d2b15ad101
- qiime2__diversity_lib__unweighted_unifrac was updated to 89423965acba
- qiime2__diversity_lib__weighted_unifrac was updated to 0e3cc7583efc
- qiime2__emperor__biplot was updated to c7d25d15856f
- qiime2__emperor__plot was updated to bc3a80afa08d
- qiime2__emperor__procrustes_plot was updated to ec2a0e6d9baf
- qiime2__feature_classifier__blast was updated to 778c23c7bcf3
- qiime2__feature_classifier__classify_consensus_blast was updated to 8f8f6d3d2304
- qiime2__feature_classifier__classify_consensus_vsearch was updated to f82f2dbf0c04
- qiime2__feature_classifier__classify_hybrid_vsearch_sklearn was updated to abdf08c37b16
- qiime2__feature_classifier__classify_sklearn was updated to 8aa82af30760
- qiime2__feature_classifier__extract_reads was updated to f3b56adfed5f
- qiime2__feature_classifier__find_consensus_annotation was updated to 44246091f51f
- qiime2__feature_classifier__fit_classifier_naive_bayes was updated to e0aebbd112a4
- qiime2__feature_classifier__fit_classifier_sklearn was updated to 651c5518951f
- qiime2__feature_classifier__vsearch_global was updated to c7bde9e4638d
- qiime2__feature_table__core_features was updated to 13e8049936ee
- qiime2__feature_table__filter_features was updated to b2df7f8e4a07
- qiime2__feature_table__filter_features_conditionally was updated to 78538c1b0993
- qiime2__feature_table__filter_samples was updated to 540707a41f82
- qiime2__feature_table__filter_seqs was updated to fd3798589de0
- qiime2__feature_table__group was updated to a27ceaf4cfc2
- qiime2__feature_table__heatmap was updated to c087d23bc043
- qiime2__feature_table__merge was updated to 4c2751c8cc0d
- qiime2__feature_table__merge_seqs was updated to 9b95556df0f4
- qiime2__feature_table__merge_taxa was updated to a0c16a5250e4
- qiime2__feature_table__presence_absence was updated to aa33dec8fd70
- qiime2__feature_table__rarefy was updated to 77dce1a45822
- qiime2__feature_table__relative_frequency was updated to 580e1edc91d7
- qiime2__feature_table__rename_ids was updated to a213286d3a38
- qiime2__feature_table__subsample was updated to 649a75b79784
- qiime2__feature_table__summarize was updated to 365ce7a8e641
- qiime2__feature_table__tabulate_seqs was updated to 6d5cd7bcc0d0
- qiime2__feature_table__transpose was updated to 70629120ae6c
- qiime2__fragment_insertion__classify_otus_experimental was updated to 52cffcc84c14
- qiime2__fragment_insertion__filter_features was updated to 2fe92e997c9a
- qiime2__fragment_insertion__sepp was updated to 2fa85eae206e
- qiime2__gneiss__assign_ids was updated to 3b50918cb7ec
- qiime2__gneiss__correlation_clustering was updated to ca5a3976d699
- qiime2__gneiss__dendrogram_heatmap was updated to 78bd3306c2d5
- qiime2__gneiss__gradient_clustering was updated to 76fb7a319e4f
- qiime2__gneiss__ilr_hierarchical was updated to d0feca181800
- qiime2__gneiss__ilr_phylogenetic was updated to 742e0648a108
- qiime2__gneiss__ilr_phylogenetic_differential was updated to 9dedc5b9b732
- qiime2__gneiss__ilr_phylogenetic_ordination was updated to f55de040b84c
- qiime2__longitudinal__anova was updated to c32b6054c7d4
- qiime2__longitudinal__feature_volatility was updated to ba818c170b06
- qiime2__longitudinal__first_differences was updated to 0019d6fb2df8
- qiime2__longitudinal__first_distances was updated to 607a63ad9e92
- qiime2__longitudinal__linear_mixed_effects was updated to 6253ca844c62
- qiime2__longitudinal__maturity_index was updated to 65eb20bd61f1
- qiime2__longitudinal__nmit was updated to 87412f607999
- qiime2__longitudinal__pairwise_differences was updated to b56e60e6c6e0
- qiime2__longitudinal__pairwise_distances was updated to 7799afde3e88
- qiime2__longitudinal__plot_feature_volatility was updated to 11730a5ad81b
- qiime2__longitudinal__volatility was updated to 0e3d1b6523e2
- qiime2__metadata__distance_matrix was updated to 8a43985a8f35
- qiime2__metadata__shuffle_groups was updated to 99fb88cf7a12
- qiime2__metadata__tabulate was updated to d6e1b976c373
- qiime2__phylogeny__align_to_tree_mafft_fasttree was updated to 2a9461620d5e
- qiime2__phylogeny__align_to_tree_mafft_iqtree was updated to 25daaf299138
- qiime2__phylogeny__align_to_tree_mafft_raxml was updated to 9af151e32f0e
- qiime2__phylogeny__fasttree was updated to 977e2ec8beb0
- qiime2__phylogeny__filter_table was updated to 05d29a3294de
- qiime2__phylogeny__filter_tree was updated to 97716f0bd25b
- qiime2__phylogeny__iqtree was updated to 2f898b3531ee
- qiime2__phylogeny__iqtree_ultrafast_bootstrap was updated to adccaaf33660
- qiime2__phylogeny__midpoint_root was updated to f4f3c556d4bd
- qiime2__phylogeny__raxml was updated to 2ff23f0ed1ba
- qiime2__phylogeny__raxml_rapid_bootstrap was updated to 1de3a5758b8c
- qiime2__phylogeny__robinson_foulds was updated to 462ba4008e3c
- qiime2__quality_control__bowtie2_build was updated to ea81dc3914f8
- qiime2__quality_control__evaluate_composition was updated to 69c5dfffb92f
- qiime2__quality_control__evaluate_seqs was updated to 4bb288dbd04c
- qiime2__quality_control__evaluate_taxonomy was updated to 13f0559220c2
- qiime2__quality_control__exclude_seqs was updated to cf4229cd0a05
- qiime2__quality_control__filter_reads was updated to 08d08d22d92b
- qiime2__quality_filter__q_score was updated to 090ca1116927
- qiime2__sample_classifier__classify_samples was updated to e72fb1ecbadc
- qiime2__sample_classifier__classify_samples_from_dist was updated to aeb2a22548a5
- qiime2__sample_classifier__classify_samples_ncv was updated to 23c5522fa836
- qiime2__sample_classifier__confusion_matrix was updated to e0a29b2a35a8
- qiime2__sample_classifier__fit_classifier was updated to f31f3c575d7e
- qiime2__sample_classifier__fit_regressor was updated to d0708941b20b
- qiime2__sample_classifier__heatmap was updated to 5ceed9008edb
- qiime2__sample_classifier__metatable was updated to 30cdc8cb01d0
- qiime2__sample_classifier__predict_classification was updated to d4dd156970fc
- qiime2__sample_classifier__predict_regression was updated to f7c33b0adf29
- qiime2__sample_classifier__regress_samples was updated to 09981e91ac53
- qiime2__sample_classifier__regress_samples_ncv was updated to e6d86f57fe1a
- qiime2__sample_classifier__scatterplot was updated to 195348fe70ef
- qiime2__sample_classifier__split_table was updated to a80604576ca2
- qiime2__sample_classifier__summarize was updated to d2cd82660ab6
- qiime2__taxa__barplot was updated to 124673b2e9e7
- qiime2__taxa__collapse was updated to 16e425d54e64
- qiime2__taxa__filter_seqs was updated to 2e3425c03486
- qiime2__taxa__filter_table was updated to 8415c3cbedb6
- qiime2__vsearch__cluster_features_closed_reference was updated to 99f3bb0084fe
- qiime2__vsearch__cluster_features_de_novo was updated to 397c1be954c2
- qiime2__vsearch__cluster_features_open_reference was updated to d62c0266f393
- qiime2__vsearch__dereplicate_sequences was updated to 4fb2b5e9beba
- qiime2__vsearch__fastq_stats was updated to 55e1a7184edd
- qiime2__vsearch__merge_pairs was updated to f455181d916d
- qiime2__vsearch__uchime_denovo was updated to 2ecd644cdfcf
- qiime2__vsearch__uchime_ref was updated to 7dbbd990440e
- qiime2_core__tools__export was updated to f47ed6c69f5d
- qiime2_core__tools__import was updated to 10447a4b0cc3
Assembly
- merqury was updated to d7edbc9c3a07
- pretext_graph was updated to 75b4a2298714
- pretext_map was updated to 79b48f02db49
- rnaspades was updated to 28189050e437
- spades_biosyntheticspades was updated to 604782a8a53a
- spades_coronaspades was updated to 9678993ca5bd
- spades_metaplasmidspades was updated to 037f9927c4ff
- spades_metaviralspades was updated to 5b26685e5d3b
- spades_plasmidspades was updated to 7bb235ff0746
- spades_rnaviralspades was updated to de1260f8a300
- metaspades was updated to f369ef5f210b
- spades was updated to a90db5dbaaf3
Mapping
- pbmm2 was updated to f4ec47f1a8da
- rgrnastar was updated to b0f2be869d6d
- rna_starsolo was updated to 42ce70172b72
Proteomics
- diann was updated to ff8c9e0e8a7b
- openms_openpepxl was updated to 40cc19c0dbd6
- openms_openpepxl was updated to a2a842b00f9c
- openms_openpepxl was updated to fc36cfd19834
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
Annotation
- agat was updated to a6318f87f2cd
- aegean_canongff3 was updated to c45c9dd066e2
- aegean_gaeval was updated to 8dc7512c9dc9
- aegean_locuspocus was updated to 1fdc517743e6
- aegean_parseval was updated to d6c074a93c51
- bakta was updated to 92eee5f31117
- funannotate_annotate was updated to d0336d67702b
- funannotate_compare was updated to 57c6718cbfcc
Imaging
- superdsm was updated to dc5f72f6b1e9
Evolution
- codeml was updated to 961a712f9743
FASTA/FASTQ
- seqprep was updated to 8a0aa44e1e5b
Graph/Display Data
- pretext_snapshot was updated to 6c571966cfb9
Metagenomic Analysis
- cat_add_names was updated to 21bf2f07f3f3
- cat_bins was updated to 0e63d03c8790
- cat_contigs was updated to f41dbb0b9ff8
- cat_prepare was updated to 51906c8c692a
- cat_summarise was updated to a8216def322b
- customize_metaphlan_database was updated to 5ed774e1616e
- extract_metaphlan_database was updated to 6a1db3b02ea7
- merge_metaphlan_tables was updated to 7f5d7b0e9884
- metaphlan was updated to fd69c607b43f
Phylogenetics
- hyphy_prime was updated to 4072360120e4
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
Metabolomics
- dimet_abundance_plot was updated to 1df18470e3d0
- dimet_bivariate_analysis was updated to 89e637c99bed
- dimet_differential_analysis was updated to e45e03a99d56
- dimet_differential_multigroup_analysis was updated to b581ea4908ae
- dimet_enrichment_plot was updated to 2de209fb390b
- dimet_isotopologues_plot was updated to 31b19ad28c81
- dimet_metabologram was updated to 7ff4f61789de
- dimet_pca_analysis was updated to c0103ea608fc
- dimet_pca_plot was updated to 23f87b8cc62b
- dimet_timecourse_analysis was updated to 40edef7d7f74
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