On 2024-03-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #434
Text Manipulation
- text_processing was updated to 12615d397df7
Graph/Display Data
- ggplot2_heatmap2 was updated to 374e9062d874
Get Data
- iabiodiv_smartbiodiv_med_environ was updated to b79faea33a8a
Metabolomics
- matchms_add_key was updated to d88b20d27caa
- matchms_metadata_export was updated to 82aaf2631875
- matchms_metadata_match was updated to 43d40415654c
- matchms_split was updated to 14a792c45c0b
- matchms_subsetting was updated to d8525504d332
- riassigner was updated to 79818ce5a8bf
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Proteomics
- openms_openpepxl was updated to 40cc19c0dbd6
- openms_openpepxl was updated to a2a842b00f9c
- openms_openpepxl was updated to fc36cfd19834
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
Annotation
- tapscan was updated to c4f865bd101a
- helixer was updated to 7c1dc010a819
- genenotebook_genenotebook_build was updated to 29eeddd8ea62
- annotatemyids was updated to a79ee60b6926
- hmmer_alimask was updated to e3e5f208e93c
- hmmer_hmmalign was updated to 71863d3bf721
- hmmer_hmmbuild was updated to 4b996c837ec8
- hmmer_hmmconvert was updated to a9dace1a1e36
- hmmer_hmmemit was updated to be03abdc6451
- hmmer_hmmfetch was updated to 34b09461bf87
- hmmer_hmmscan was updated to 4a54e4c9188b
- hmmer_hmmsearch was updated to df7a52791be9
- hmmer_jackhmmer was updated to 9fdeca68a6b5
- hmmer_nhmmer was updated to 54b92ae4f75b
- hmmer_nhmmscan was updated to fb1305d0d1c6
- hmmer_phmmer was updated to 37bcc9fb0bb1
- integron_finder was updated to 392f100eebcd
- multigsea was updated to e48b10ce08b8
- omark was updated to ce13b4c42256
- tsebra was updated to 66310cfc17dd
Imaging
- cellpose was updated to 030bfe6065d9
- cell_intensity_processing was updated to 7f93f472a242
- gate_finder was updated to 8097f9124f87
- rename_tiff_channels was updated to d2c59a1ac0c4
- squidpy was updated to bad34051dc8a
- vitessce_spatial was updated to 4bf852448b5d
- bioformats2raw was updated to 1b3e7d53cec6
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
- data_manager_omamer was updated to e1502e4f8725
Assembly
- abyss was updated to 0124fce4654a
Convert Formats
- bioext_bam2msa was updated to 27673f5b5343
FASTA/FASTQ
- rasusa was updated to c8f1cd6c1fbf
Mapping
- bowtie2 was updated to 0d4acadabb04
- bioext_bealign was updated to 8a7462c0ac14
- hisat2 was updated to 0c16cad5e03b
- pbmm2 was updated to 55b7b257e12f
Metagenomic Analysis
- ampvis2_alpha_diversity was updated to 03bc6f6e667b
- ampvis2_boxplot was updated to 6eae290d762b
- ampvis2_core was updated to 0d30cb9b14cc
- ampvis2_export_fasta was updated to 45ea720bba74
- ampvis2_frequency was updated to cdba4eab5a54
- ampvis2_heatmap was updated to a2d4da20749a
- ampvis2_load was updated to 932d7573a561
- ampvis2_merge_ampvis2 was updated to 78ff575ef835
- ampvis2_mergereplicates was updated to 9bb9bf720e68
- ampvis2_octave was updated to ffbccf6fe7fb
- ampvis2_ordinate was updated to 75e025c9bc10
- ampvis2_otu_network was updated to b8f0ee2915d1
- ampvis2_rankabundance was updated to 28b63a7e22ca
- ampvis2_rarecurve was updated to cad82070c2df
- ampvis2_setmetadata was updated to 0d18b4bb08cb
- ampvis2_subset_samples was updated to 543c11bd472a
- ampvis2_subset_taxa was updated to 512e102a19ad
- ampvis2_timeseries was updated to ceda8519e440
- ampvis2_venn was updated to b966b12ffe36
- coverm_contig was updated to 28d740f2c0b0
- coverm_genome was updated to 73b667038f46
- das_tool was updated to 7d997332582e
- fasta_to_contig2bin was updated to ce6c26db9701
- recentrifuge was updated to 76bf12b928f4
Peak Calling
- peakzilla was updated to 8badcbe5792c
Phylogenetics
- hyphy_prime was updated to 4072360120e4
SAM/BAM
- mosdepth was updated to 5cd5d0947354
Variant Calling
- manta was updated to 555971edd46e
- vcfanno was updated to 4f3c5e634679
Virology
- lineagespot was updated to 99494998688a
hca_sc_scanpy_tools
- anndata_ops was updated to a4774b7b2e85
- scanpy_compute_graph was updated to 22bd5861706d
- scanpy_filter_cells was updated to bf1e0bdec1db
- scanpy_filter_genes was updated to cc64914b0cf4
- scanpy_find_cluster was updated to 36735850e461
- scanpy_find_markers was updated to d8f5224005bb
- scanpy_find_variable_genes was updated to 2bc42a6f092b
- scanpy_integrate_bbknn was updated to c9da9192eee5
- scanpy_integrate_combat was updated to 3c47bc560688
- scanpy_integrate_harmony was updated to c354af93f567
- scanpy_integrate_mnn was updated to ff6decc0f432
- scanpy_multiplet_scrublet was updated to 2f9517a24c73
- scanpy_normalise_data was updated to 3027cb62adbd
- scanpy_parameter_iterator was updated to 73d43034c860
- scanpy_plot_embed was updated to 7d5c97823f8b
- scanpy_plot_scrublet was updated to 6f5509cf3176
- scanpy_plot_trajectory was updated to cb1992d1804b
- scanpy_read_10x was updated to 078aa23c9374
- scanpy_regress_variable was updated to 0bab2ae44e7a
- scanpy_run_diffmap was updated to 79cc06a557b0
- scanpy_run_dpt was updated to 03921aa8b29c
- scanpy_run_fdg was updated to be019b069e31
- scanpy_run_paga was updated to b2768cae00a1
- scanpy_run_pca was updated to 4428dba93375
- scanpy_run_tsne was updated to abdb61e4afa3
- scanpy_run_umap was updated to ea91cfd0444e
- scanpy_scale_data was updated to 4cc9362782b4
hca_sc_seurat_tools
- seurat_dim_plot was updated to 64174ac50d78
- seurat_export_cellbrowser was updated to 36221da750e8
- seurat_filter_cells was updated to cd9f564bd63f
- seurat_find_clusters was updated to d541e9e62beb
- seurat_find_markers was updated to 07fc9f4841b3
- seurat_find_neighbours was updated to ba897c57bdd9
- seurat_find_variable_genes was updated to 948fc0276b4f
- seurat_normalise_data was updated to 3f49bc9c9213
- seurat_read10x was updated to f5db0e853f57
- seurat_run_pca was updated to 8ded486b0014
- seurat_run_tsne was updated to 0db997e4a81d
- seurat_scale_data was updated to 5e9ba303f9e1
Spatial Omics
- mesmer was updated to 2675ff99a53b
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