On 2024-03-17, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #436
Graph/Display Data
- pygenometracks was updated to 36b848d5f3ec
GIS Data Handling
- interpolation_run_idw_interpolation was updated to b4b9edf9ea27
- otb_band_math was updated to 0ed34e3202b9
- otb_mean_shift_smoothing was updated to 6c6e8b16dba6
Metabolomics
- assign_ri_from_comment was updated to 6975af39ba79
- matchms_add_key was updated to a14e7fe18387
- matchms_convert was updated to 165f303aa2d1
- matchms_convert was updated to 1f063ff015b9
- matchms_filtering was updated to 3370f5b08d19
- matchms_fingerprint_similarity was updated to 1d3ee4f9f63d
- matchms_fingerprint_similarity was updated to 99da744050b7
- matchms_formatter was updated to 23d4bc72c505
- matchms_formatter was updated to 9287136a396a
- matchms_metadata_export was updated to 786df5cf7dec
- matchms_metadata_match was updated to 7d171a8c71dc
- matchms_metadata_merge was updated to 0c9f977e8d75
- matchms_networking was updated to 2200e9b7a2b3
- matchms_networking was updated to 7985c63a880c
- matchms_remove_key was updated to 8a8a58be3929
- matchms_spectral_similarity was updated to 44e7027714d7
- matchms_spectral_similarity was updated to 67f65bcc94bf
- matchms_split was updated to 114617e6ad33
- matchms_split was updated to 986ecfc55ed9
- matchms_subsetting was updated to 4ef214cf07c1
- matchms_subsetting was updated to 9231f7bee46d
- use_theoretical_mz_annotations was updated to e0cac9994a72
ChemicalToolBox
- qcxms_getres was updated to ef51824f6d04
- qcxms_neutral_run was updated to 0d9d72ef658f
- qcxms_production_run was updated to b566b27247f7
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Get Data
- unipept was updated to 21a560af5913
- sra_tools was updated to 1ec814014652
Metagenomic Analysis
- kraken was updated to 766d5f63b0f4
- kraken_filter was updated to 67236d921e83
- kraken_report was updated to 1c677354ab18
- kraken_translate was updated to 8cebdc74a48f
- ampvis2_alpha_diversity was updated to 52fbe4eb7ce7
- ampvis2_boxplot was updated to b4c6f8741989
- ampvis2_core was updated to 943c2ae9594a
- ampvis2_export_fasta was updated to c1fcdec30d69
- ampvis2_frequency was updated to ac9564dcdb99
- ampvis2_heatmap was updated to 14695ae019be
- ampvis2_load was updated to 3481feabc54e
- ampvis2_merge_ampvis2 was updated to d8334b328618
- ampvis2_mergereplicates was updated to 63ed7a3cd45f
- ampvis2_octave was updated to 4289db874e3c
- ampvis2_ordinate was updated to 811df76f4f26
- ampvis2_otu_network was updated to 7e6f33f40312
- ampvis2_rankabundance was updated to d02f4a87eb55
- ampvis2_rarecurve was updated to 2e69edaaa834
- ampvis2_setmetadata was updated to b8fd62239d7e
- ampvis2_subset_samples was updated to c8bfb923d7d4
- ampvis2_subset_taxa was updated to e2df49914652
- ampvis2_timeseries was updated to 9de032723f5b
- ampvis2_venn was updated to 338f47a9e25c
- kraken_biom was updated to b582a159bb10
- kraken_taxonomy_report was updated to bfae8da6082c
- maaslin2 was updated to ef2cace85809
- mapseq was updated to f1d1dafc836d
- nonpareil was updated to cef64c36c89e
- phyloseq_from_dada2 was updated to 87064cb77a52
- phyloseq_plot_ordination was updated to dfe800a3faaf
- phyloseq_plot_richness was updated to fb7c4bbe8994
- plasflow was updated to 1d2a91ab28b7
- scoary was updated to 77d50ec2bcf2
- seqsero2 was updated to 5a9a6074d99b
- vegan_diversity was updated to a1b80a746054
- vegan_fisher_alpha was updated to 0148e5cf20b2
- vegan_rarefaction was updated to af1211ed6c8e
FASTA/FASTQ
- lighter was updated to 89b453176d05
- ncbi_fcs_gx was updated to 3cdb96f2855d
Annotation
- compleasm was updated to 79413aecc398
- kofamscan was updated to 95c71179a054
- krocus was updated to 6a97c3a857d2
- legsta was updated to 0411fca1d681
- lorikeet_spoligotype was updated to da22667725c7
- miniprot was updated to 00b22efdd100
- miniprot_index was updated to 9e2772125405
- mirmachine was updated to f2e87c81497d
- omark was updated to 9607b69326e1
- prodigal was updated to 91791b6ecd38
- tbprofiler was updated to d03af1c7002c
- transtermhp was updated to 42b38f6d9f68
- tsebra was updated to f124679db9df
Proteomics
- msstats was updated to de7593c29499
- openms_openpepxl was updated to 40cc19c0dbd6
- openms_openpepxl was updated to a2a842b00f9c
- openms_openpepxl was updated to fc36cfd19834
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
Convert Formats
- mz_to_sqlite was updated to 705821bf30d2
- bam2fastx was updated to 61a6b93ee6e1
- biom_convert was updated to d4d4e9febf5c
Machine Learning
- biomodels_biomd0000001066 was updated to 1748c5d74df5
Mapping
- graphmap_align was updated to 1c6c961851de
- graphmap_overlap was updated to 815251b32ccc
Imaging
- points2binaryimage was updated to 2ad6350df85b
Assembly
- miniasm was updated to b799a615995d
Genome editing
- crispr_studio was updated to a227c05e0a55
- sonneityping was updated to 0ac12c344bfa
Nanopore
- nanopolishcomp_eventaligncollapse was updated to 74d7b06c2b92
- nanopolishcomp_freqmethcalculate was updated to f08dfdcefdbd
- pycoqc was updated to 3a2f2e24c37e
- pycoqc was updated to fae03f3d4bf7
Phylogenetics
- hyphy_prime was updated to 4072360120e4
- nextalign was updated to aadc5d8099e2
- nextclade was updated to 4f6349228462
SAM/BAM
- bamtools was updated to 970e6333f07e
- bamtools_filter was updated to 993b19f20c76
- bamtools_split_mapped was updated to fa7b5520ae53
- bamtools_split_paired was updated to 75d5afa09972
- bamtools_split_ref was updated to 9b8feb118f9e
- bamtools_split_tag was updated to e9b9c489aacc
Single-cell
- scanpy_cluster_reduce_dimension was updated to 6f83f8fd381f
- scanpy_filter was updated to 277313130da5
- scanpy_inspect was updated to 5c3ebe2adc77
- scanpy_normalize was updated to 7b9fafe32c86
- scanpy_plot was updated to 6f5349dd5c49
- scanpy_remove_confounders was updated to d18e7a6e5cd4
Variant Calling
- cnv_phenopacket was updated to 61aad58c7b2d
- cnv_vcf2json was updated to c8caf812d33b
Virology
- ivar_consensus was updated to 40737febe339
- ivar_filtervariants was updated to 096a5b0210cc
- ivar_filtervariants was updated to 618297d23022
- ivar_removereads was updated to a1c2aecd7a0d
- ivar_trim was updated to 28e4bcbc86e7
- ivar_trim was updated to 86a20ae274fc
- ivar_variants was updated to 194e3ceee923
- read_it_and_keep was updated to fa7086274673
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
hca_sc_label_analysis_tools
- decoupler_pseudobulk was updated to 130e25d3ce92
- decoupler_pseudobulk was updated to 893ff9213a34
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