On 2024-06-05, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #450
Metabolomics
- dimet_abundance_plot was updated to 279ce0d93d53
- dimet_bivariate_analysis was updated to f2ce3a338418
- dimet_differential_analysis was updated to 78f776370dfb
- dimet_differential_multigroup_analysis was updated to 0bba1203264f
- dimet_enrichment_plot was updated to 5c12e5d57e53
- dimet_isotopologues_plot was updated to 89ca62980a2e
- dimet_metabologram was updated to 82fbf955bb0f
- dimet_pca_analysis was updated to 06b6d0c16833
- dimet_pca_plot was updated to 9c7f9f79a93a
- dimet_timecourse_analysis was updated to c2f9c63b8b47
- matchms_add_key was updated to 7c5b86026e57
- matchms_convert was updated to 692471e62c68
- matchms_filtering was updated to 07cac38cbd29
- matchms_fingerprint_similarity was updated to ad9d2d1b2b8d
- matchms_formatter was updated to 6501d0287dcd
- matchms_metadata_export was updated to dd49ef90297c
- matchms_metadata_match was updated to 844d32c59314
- matchms_metadata_merge was updated to fc1a698a71e8
- matchms_networking was updated to ab8a33c370f5
- matchms_remove_key was updated to 19367db5cf3c
- matchms_remove_spectra was updated to c24ebd41dd53
- matchms_spectral_similarity was updated to 26c92af1bd28
- matchms_split was updated to 446fddefcee7
- matchms_subsetting was updated to cab0e4dcf372
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
- qiime2__diversity__filter_alpha_diversity was updated to 8334d515cc22
Get Data
- sra_tools was updated to 516a54ddf218
Mapping
- bowtie2 was updated to d5ceb9f3c25b
- bwa was updated to 2477830927ec
- bbtools_bbmap was updated to 3f94a2e3d513
- bwameth was updated to cf1322aeb137
Annotation
- amrfinderplus was updated to 7844dbe4f8e2
- fastani was updated to 3c6e0e8df873
- tbprofiler was updated to 4839e590cb26
- tbvcfreport was updated to 42818629ec4c
Assembly
- fastk_fastk was updated to 87f4b4dced3e
- pairtools_dedup was updated to 56bb29747b4d
- pairtools_parse was updated to d3a7b17714c1
- pairtools_sort was updated to fdd073110081
- pairtools_split was updated to 39df08e91cdf
- pairtools_stats was updated to c20a07c9237b
- raven was updated to 5c55448d0f33
Convert Formats
- tooldistillator was updated to 65a69de1e294
- tooldistillator_summarize was updated to 6ff67d2860e1
Evolution
- iqtree was updated to 70acec670c30
Extract Features
- orfipy was updated to f5114c60dc95
FASTA/FASTQ
- bbtools_bbduk was updated to d1f62024a08b
- bbtools_bbmerge was updated to 1af48f9cc27b
- bbtools_tadpole was updated to cbc75076778f
- falco was updated to e462044ece67
- ncbi_fcs_gx was updated to 49f8eae39606
- seqkit_fx2tab was updated to 1dc73570fd5a
- seqkit_locate was updated to 5fb2dc40c4de
- seqkit_stats was updated to 812705bcf39c
- cutadapt was updated to fe74900d6dc7
Graph/Display Data
- volcanoplot was updated to a363ba287b88
Metagenomic Analysis
- bigscape was updated to ad2f19722a0e
- cami_amber was updated to afc795d10918
- cami_amber_add was updated to b07cfe3b877e
- cami_amber_convert was updated to 8754ed6f0096
- drep_compare was updated to 9902c85117a4
- drep_dereplicate was updated to cafcc13990ee
- metabuli was updated to 70129c1e86a8
- virannot_blast2tsv was updated to 88ebde55bef8
- virannot_otu was updated to 6838c2fd1228
- virannot_rps2tsv was updated to 84d20d9c292d
None
- amrfinderplus_data_manager_build was updated to a5921c09b7b7
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
Mothur
- mothur_unifrac_weighted was updated to 7cb9b120fd44
Nanopore
- medaka_consensus was updated to fbf007713188
Phylogenetics
- hyphy_prime was updated to 4072360120e4
Proteomics
- prot_scriber was updated to 863ab6ebcafc
Single-cell
- scanpy_cluster_reduce_dimension was updated to 4d8f983cd751
- scanpy_filter was updated to d636ce5cde16
- scanpy_inspect was updated to f54f0f0598ad
- scanpy_normalize was updated to d844935c906c
- scanpy_plot was updated to f7446fd8d5e7
- scanpy_remove_confounders was updated to c65fce500915
Variant Calling
- bbtools_callvariants was updated to 66b138a2e74c
- irissv was updated to 3242dbeea69c
- smgu_frameshift_deletions_checks was updated to 99f43642d1ae
Virology
- virheat was updated to 927e55d1aa97
hca_sc_scanpy_tools
- scanpy_find_variable_genes was updated to 64dd8bb151e1
- scanpy_multiplet_scrublet was updated to 53ce0e336840
Imaging
- gate_finder was updated to 80102785f5ff
- vitessce_spatial was updated to 7cc457aa78b1
Supported by
