On 2024-07-01, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #456

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

Metagenomic Analysis

• aldex2 was updated to 75214276e2b7
• khmer_abundance_distribution was updated to 7624945cacd3
• khmer_abundance_distribution_single was updated to 385a965c6f87
• khmer_count_median was updated to b3d513c7093e
• khmer_extract_partitions was updated to adb3dd5a899f
• khmer_filter_abundance was updated to b86562b4f3fd
• khmer_filter_below_abundance_cutoff was updated to 19607c740d19
• khmer_normalize_by_median was updated to b1fe2ef3d244
• khmer_partition was updated to 5a0fa29951ae
• kraken2 was updated to cdee7158adf3
• maaslin2 was updated to 43ccbef89f1d

Proteomics

• openms_openpepxl was updated to 40cc19c0dbd6
• openms_openpepxl was updated to a2a842b00f9c
• openms_openpepxl was updated to fc36cfd19834
• openms_percolatoradapter was updated to 0fc9ae55bcfc
• openms_percolatoradapter was updated to e7881a82b56d
• openms_xfdr was updated to 81402a5e4173
• openms_xfdr was updated to 9a6e3bb0f358

Annotation

• genenotebook_genenotebook_build was updated to a0358a5ab3ae
• bakta was updated to ba6990f72184
• funannotate_annotate was updated to 9c15ca7e764e
• funannotate_clean was updated to 8e1ace8f77c6
• funannotate_compare was updated to 0418d28136de
• funannotate_predict was updated to 4b96ced19f75
• funannotate_sort was updated to d77fdcca400e
• integron_finder was updated to bfd290fe1588
• tbprofiler was updated to 51dd22484644

Convert Formats

• bioext_bam2msa was updated to 7ecb45126cd2

Get Data

• ncbi_datasets was updated to a6a475ed58cb

Graph/Display Data

• volcanoplot was updated to 2f557f6abbfb

Mapping

• bioext_bealign was updated to 396cc0c65700
• kma was updated to 98099e4da1fd

None

• data_manager_bakta was updated to 97b1b5ad1cda
• data_manager_bakta was updated to baceff842902
• data_manager_build_kraken2_database was updated to 13851aefa67a
• data_manager_build_kraken2_database was updated to 539b008cfe1c
• data_manager_diamond_database_builder was updated to 4a08b7b76b78
• data_manager_metaphlan_database_downloader was updated to a88f077f1994

Mothur

• mothur_amova was updated to 389ac95dc2f5
• mothur_amova was updated to 8642712a607c
• mothur_anosim was updated to 3218d342b0de
• mothur_chimera_ccode was updated to 4e3288a885b1
• mothur_chimera_perseus was updated to 0f3baac24045
• mothur_chimera_perseus was updated to 54bc4863eb3d
• mothur_chimera_slayer was updated to 0cc35c0a3d05
• mothur_chimera_uchime was updated to 4de76e144252
• mothur_chimera_uchime was updated to d9fe0fecb696
• mothur_chop_seqs was updated to 29f963e785a0
• mothur_chop_seqs was updated to e7a88b8551ff
• mothur_classify_otu was updated to 29882f4a1ef3
• mothur_classify_otu was updated to ff1bc0299372
• mothur_cluster was updated to 1b695ad32179
• mothur_cluster was updated to 6366f4483b35
• mothur_cluster_classic was updated to 14e978a6ffdf
• mothur_cluster_classic was updated to 6e6b8dd3b770
• mothur_cluster_fragments was updated to 5fa9b6d481f6
• mothur_cluster_fragments was updated to 7b96c990a457
• mothur_cluster_split was updated to 19f45bdbffd9
• mothur_collect_single was updated to 9ee1a391ed43
• mothur_collect_single was updated to a52aa1bdc760
• mothur_cooccurrence was updated to 0e05f58541d0
• mothur_cooccurrence was updated to 353091f7b470
• mothur_corr_axes was updated to 0968daa9b52f
• mothur_corr_axes was updated to b030bd08117b
• mothur_count_groups was updated to 14a1358d0846
• mothur_count_groups was updated to dc3826bfc1ed
• mothur_count_seqs was updated to 014583f8e83b
• mothur_count_seqs was updated to ffee46220ddd
• mothur_deunique_seqs was updated to 0369aff1be76
• mothur_deunique_seqs was updated to 3767f899f13c
• mothur_deunique_tree was updated to 1ace9d6863aa
• mothur_deunique_tree was updated to 283af2e6130c
• mothur_dist_seqs was updated to 10f5ecfab7bb
• mothur_dist_seqs was updated to 4d76fba83f24
• mothur_dist_shared was updated to 1a899fec55e1
• mothur_dist_shared was updated to 418100660ba3
• mothur_fastq_info was updated to 1edab4936153
• mothur_fastq_info was updated to 22da6f6c5be8
• mothur_filter_shared was updated to 007311ce6297
• mothur_filter_shared was updated to c8c3b2271c87
• mothur_get_group was updated to 081d0fbf9751
• mothur_get_group was updated to d26de4fffac5
• mothur_get_label was updated to 07d9a6a72e6d
• mothur_get_label was updated to 7f479eedd900
• mothur_get_lineage was updated to 563718e09fa8
• mothur_get_lineage was updated to 6fbd83d3a29f
• mothur_get_otus was updated to 278a9f09614c
• mothur_get_otus was updated to 3f68e8e700c9
• mothur_get_seqs was updated to 32a95d4cd850
• mothur_get_seqs was updated to c8b640a7aea1
• mothur_get_sharedseqs was updated to 32040fb8ffdf
• mothur_get_sharedseqs was updated to ea2e9c5e62b9
• mothur_heatmap_bin was updated to 35a719cd08da
• mothur_homova was updated to 68005ede9e6e
• mothur_homova was updated to 8ebe74ce080b
• mothur_indicator was updated to 0232e2fe594c
• mothur_indicator was updated to f3e6f88445fb
• mothur_lefse was updated to 008cb5a481f2
• mothur_lefse was updated to d952b95bafe9
• mothur_libshuff was updated to 1e4687170395
• mothur_list_otulabels was updated to 0c9eb32683bf
• mothur_list_otulabels was updated to 6e895dd848e8
• mothur_make_biom was updated to 0b5397a74165
• mothur_make_contigs was updated to 00dd059b77e5
• mothur_make_contigs was updated to 7238968f58f7
• mothur_make_design was updated to 185c17f84d91
• mothur_make_design was updated to 7a6b209a7bd7
• mothur_make_fastq was updated to 1684157db3c1
• mothur_make_fastq was updated to 4287ded138de
• mothur_make_lookup was updated to 4dd1404ee026
• mothur_make_lookup was updated to 9a074f55579e
• mothur_make_shared was updated to 5eaf2d7253f6
• mothur_make_shared was updated to d0967ae326be
• mothur_mantel was updated to 17b471efdc40
• mothur_mantel was updated to d1a9a6260101
• mothur_merge_files was updated to 129646af86bc
• mothur_merge_files was updated to bc20680d28d5
• mothur_merge_groups was updated to 052bc33e134e
• mothur_merge_groups was updated to 2624af4d11ac
• mothur_metastats was updated to 6adb9311e99d
• mothur_metastats was updated to feb408da0143
• mothur_mimarks_attributes was updated to 1dbd31c7a031
• mothur_nmds was updated to 35a66c1fae5e
• mothur_otu_association was updated to 0037bed5bf77
• mothur_otu_association was updated to 7cfe3ddd183a
• mothur_otu_hierarchy was updated to 0161571cd8f8
• mothur_otu_hierarchy was updated to 2e82b56377d8
• mothur_pairwise_seqs was updated to 39c7213ca279
• mothur_pairwise_seqs was updated to 8f31cb68e5bf
• mothur_parse_list was updated to 59906aed724a
• mothur_parse_list was updated to b52a0ca5e21c
• mothur_parsimony was updated to 65955ae23f29
• mothur_parsimony was updated to fbb78e1bc3a3
• mothur_pca was updated to 7474b222205d
• mothur_pca was updated to b931ab1fb5da
• mothur_pcoa was updated to 1c1d69d94f7d
• mothur_pcoa was updated to 40b0d8eb3725
• mothur_pcr_seqs was updated to 0a23bfe005be
• mothur_pcr_seqs was updated to 644d8a3af62d
• mothur_phylo_diversity was updated to 20b1d5bb66d0
• mothur_phylo_diversity was updated to 5a9bf07c250c
• mothur_phylotype was updated to 12e24ffced04
• mothur_phylotype was updated to e6ecdb693d0c
• mothur_pre_cluster was updated to 6532c3424bfe
• mothur_primer_design was updated to 487977c2c586
• mothur_primer_design was updated to e8d5596c1d98
• mothur_rarefaction_shared was updated to 325ecaad64c0
• mothur_rarefaction_shared was updated to 64c70653e86d
• mothur_rarefaction_single was updated to 47264675a4ea
• mothur_remove_otulabels was updated to 1f6046c0efdd
• mothur_remove_otulabels was updated to c378fb3fda31
• mothur_remove_otus was updated to 2a833eb1005c
• mothur_remove_rare was updated to 189db1a23e9a
• mothur_remove_seqs was updated to 2fa446f85b18
• mothur_remove_seqs was updated to d38f2ac5db71
• mothur_sens_spec was updated to 03dd3c928d65
• mothur_shhh_flows was updated to 408595fde5c6
• mothur_shhh_flows was updated to af840f3c860e
• mothur_shhh_seqs was updated to 151a711dec84
• mothur_shhh_seqs was updated to 60d8636adf3e
• mothur_sort_seqs was updated to 2f6a9498447e
• mothur_sort_seqs was updated to 437838af4988
• mothur_split_abund was updated to 246519916e6a
• mothur_split_abund was updated to ff3e693f8d4d
• mothur_split_groups was updated to 53cbf80d4a65
• mothur_split_groups was updated to ccdcfd746250
• mothur_summary_qual was updated to 11be0e5f3ebb
• mothur_summary_qual was updated to 7afd2d352e05
• mothur_summary_seqs was updated to 1a8e53763086
• mothur_summary_seqs was updated to 600c14c6dcc5
• mothur_summary_shared was updated to 47370a4efc95
• mothur_summary_shared was updated to 50751118a506
• mothur_tree_shared was updated to 73dd30cbca20
• mothur_tree_shared was updated to 8bca555fbcaf
• mothur_unique_seqs was updated to 71788e5ced45
• mothur_unique_seqs was updated to a033f325ad8d

Nanopore

• medaka_variant_pipeline was updated to 7623e5888be9

Phylogenetics

• hyphy_prime was updated to 4072360120e4

RNA Analysis

• brew3r_r was updated to 05f8e9d1e8b8

Send Data

• ena_upload was updated to 5cb6146337d8

Text Manipulation

• filter_tabular was updated to 90f657745fea
• query_tabular was updated to cf4397560712

Virology

• cooc_mutbamscan was updated to f54e0ba38257
• cooc_pubmut was updated to ce8b15a55bbe
• cooc_tabmut was updated to cb0d9eb033ef
• ivar_consensus was updated to 3a72fede57ce
• ivar_filtervariants was updated to fcbeda41d0ac
• ivar_removereads was updated to 5dc33613c288
• ivar_trim was updated to a250929be21b
• ivar_variants was updated to abbc8041e8ec

Metabolomics

• dimet_abundance_plot was updated to db1e58e44a5c
• dimet_bivariate_analysis was updated to f070b08ff139
• dimet_differential_analysis was updated to 6a63c1d832db
• dimet_differential_multigroup_analysis was updated to efe13e94f70d
• dimet_enrichment_plot was updated to be19aa1df5af
• dimet_isotopologues_plot was updated to a7d1d77e7cc3
• dimet_metabologram was updated to c7ff01bd331b
• dimet_pca_analysis was updated to 0b7d9818713b
• dimet_pca_plot was updated to ff64373cebc2
• dimet_timecourse_analysis was updated to e8b6448af300