On 2024-09-23, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #476
Metabolomics
- mfassignr_findrecalseries was updated to ad4176b336dc
- mfassignr_histnoise was updated to e93401e2ad89
- mfassignr_isofiltr was updated to ef0388b42f7a
- mfassignr_kmdnoise was updated to a9fba8378048
- mfassignr_mfassign was updated to d2bad53dd220
- mfassignr_mfassigncho was updated to b92c9388240a
- mfassignr_recal was updated to 3ea8ed561c5a
- mfassignr_recallist was updated to 1104682fb7cc
- mfassignr_snplot was updated to ccd9b0c1aee6
- ms2deepscore_config_generator was updated to 7e4ac334fc33
- ms2deepscore_similarity was updated to 58c95171a0d3
- ms2deepscore_training was updated to 0a0529822d91
- recetox_aplcms_align_features was updated to c53a97599181
- recetox_aplcms_compute_clusters was updated to 18ec7635bac6
- recetox_aplcms_compute_template was updated to 134be5abb208
- recetox_aplcms_correct_time was updated to 51332c2520c7
- recetox_aplcms_generate_feature_table was updated to b341cfd4baf8
- recetox_aplcms_merge_known_table was updated to cf061712a184
- recetox_aplcms_recover_weaker_signals was updated to 24278c6b6d1c
- recetox_aplcms_remove_noise was updated to ea0758b41473
- xcms_plot_eic was updated to 51015f22fcb7
- xcms_plot_raw was updated to 520448a32548
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
- qiime2__demux__emp_single was updated to 19e2495b60e8
- qiime2__diversity__filter_alpha_diversity was updated to 8334d515cc22
Data Managers
- data_manager_qiime_database_downloader was updated to ed86a8f378c8
- genomad_build_database was updated to c4ec3d81eeee
Annotation
- antismash was updated to e78e25d3b4bd
- cpt_intersect_adj was updated to 00aab5199327
- cpt_prophage_relatedness was updated to 7ba8b1f0fdf0
- cpt_protein_blast_grouping was updated to 11701cc63084
- argnorm was updated to bae2bc0f1b66
- evidencemodeler was updated to eb9dc0a70506
- goseq was updated to 43798b4caee0
- mitos was updated to c7553ba39670
Proteomics
- encyclopedia_library_to_blib was updated to 99297071f4b5
- encyclopedia_prosit_csv_to_library was updated to 2aad7301632d
- encyclopedia_searchtolib was updated to fb192dd6658a
- encyclopedia_walnut was updated to 0d2e93e01e68
- openms_percolatoradapter was updated to 147aaac03456
- zeiss_lmd_converter was updated to f17bc16fefcf
Assembly
- flye was updated to 1f0769f0b56b
- abyss was updated to d6d5ccc2c581
- rnaquast was updated to 8e66f695d859
FASTA/FASTQ
- gfastats was updated to ad1149b4f795
- fasta_clipping_histogram was updated to 8889eb864cef
- rasusa was updated to add156116c63
Graph/Display Data
- jbrowse2 was updated to 2fff478aca4b
Machine Learning
- sklearn_discriminant_classifier was updated to 5552eda109bd
Metagenomic Analysis
- tiara was updated to 3f33a8ac8891
- drep_dereplicate was updated to 368cb4bef9d8
- gtdbtk_classify_wf was updated to b907a3c0434f
- metabuli was updated to 70129c1e86a8
- metaphlan was updated to 740fd2d16a28
Imaging
- colocalization_viz was updated to 0f8652663a03
- overlay_moving_and_fixed_image was updated to b4fc6e09e576
- overlay_segmentation_mask was updated to 22e573b7dcb1
None
- data_manager_picard_index_builder was updated to 7124d2c14e4b
- data_manager_bakta was updated to 3e73c97f025d
- data_manager_bakta was updated to baceff842902
- data_manager_bakta was updated to d74850cf4e42
- data_manager_build_bracken_database was updated to 5c8a23ccb14a
- data_manager_build_kraken2_database was updated to 13851aefa67a
- data_manager_build_kraken2_database was updated to 1e34d2e3d285
- data_manager_build_kraken2_database was updated to 539b008cfe1c
- data_manager_build_kraken2_database was updated to 9002633b4737
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
- data_manager_gtdbtk_database_installer was updated to 2814c058a087
- data_manager_gtdbtk_database_installer was updated to df84aaed4769
- data_manager_gtdbtk_database_installer was updated to e7b39a7e0024
- data_manager_humann2_database_downloader was updated to ff9cf22838d4
- data_manager_humann_database_downloader was updated to fea85c467896
- data_manager_metaphlan_database_downloader was updated to 2c61c30a57e7
- data_manager_ncbi_fcs_gx_database_downloader was updated to 6be6e6198ac3
- data_manager_omamer was updated to e1502e4f8725
- data_manager_semibin was updated to 676915c44e1e
Convert Formats
- ucsc_axtchain was updated to ac3bae00a350
- ucsc_chainnet was updated to 3a213e01bc7f
- ucsc_netfilter was updated to 128ec4c44111
- ucsc_nettoaxt was updated to 55efc5c37c16
Filter and Sort
- bigwig_outlier_bed was updated to 00b3da7776a0
- bigwig_outlier_bed was updated to ebcd48f183b3
Multiple Alignments
- mummer_mummer was updated to 57f042937ba7
Phylogenetics
- hyphy_gard was updated to 5b777002c2de
Single-cell
- cosg was updated to cf880680fd0b
- scanpy_cluster_reduce_dimension was updated to 38db3fef7aad
- scanpy_filter was updated to 8cb783c81905
- scanpy_normalize was updated to 56c0d4acef02
- scanpy_plot was updated to 0185bd174ea0
- scanpy_remove_confounders was updated to 9fb627495ec2
- spapros_evaluation was updated to 0c1b0a3b19df
- spapros_selection was updated to c7527212b66b
Statistics
- clustering_from_distmat was updated to f8ee933de3ca
Variant Calling
- cnvkit_access was updated to 1ab40b66c2ba
deepTools
- deeptools_alignmentsieve was updated to e5a296ce8fbb
hca_sc_label_analysis_tools
- decoupler_pseudobulk was updated to bd4b54b75888
RNA Analysis
- mirdeep2 was updated to 6a17e1229b9f
- mirdeep2_mapper was updated to dbbe92348c7a
- rnacode was updated to d49b9759e294
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