On 2024-10-06, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #478
Species abundance
- pampa_presabs was updated to 07b081730994
Graph/Display Data
- jbrowse2 was updated to dc3fe98e7b37
- ggplot2_heatmap was updated to 1a72f938213e
- ggplot2_heatmap was updated to fe8d4655ee10
- ggplot2_histogram was updated to 497d700a5229
- ggplot2_histogram was updated to 536078949ae4
- ggplot2_histogram was updated to 6fc8bab811da
- ggplot2_point was updated to 5298e06f14f9
- ggplot2_violin was updated to d8305f18060e
- pe_histogram was updated to 594b85e4237a
- pygenometracks was updated to 59fd173ac850
FASTA/FASTQ
- fasta_filter_by_length was updated to c8cd0a03db49
- fastq_groomer was updated to 71e5fa25b8a2
- fastq_masker_by_quality was updated to 4e1d64e6385f
- fastq_paired_end_deinterlacer was updated to 523c2aff0376
- fastq_paired_end_interlacer was updated to b41c2c1bcfbf
- fastq_paired_end_joiner was updated to 8d958759cf2a
- fastq_paired_end_splitter was updated to 397dc333436b
- fastq_stats was updated to f86c27295151
- fastq_to_tabular was updated to 43807a65369f
- fastq_trimmer was updated to f0b18efb97f1
- fastqtofasta was updated to ac3fed111eb6
- fastx_renamer was updated to d8a3d31554d7
- fastx_trimmer was updated to b98f3fa516a3
- bbtools_bbduk was updated to 425dab0e057b
- bbtools_bbmerge was updated to fc029a9b4d07
- umi_tools_count was updated to 71ad4a56c40c
- umi_tools_count was updated to 933220bbc2ae
- umi_tools_dedup was updated to c5a2ee07c4e1
- umi_tools_extract was updated to 7a7e33d28f62
- umi_tools_group was updated to 428735be9764
- umi_tools_whitelist was updated to e4e12f0b3af1
GIS Data Handling
- xarray_metadata_info was updated to 7edbe5ae8b72
SAM/BAM
- sam_to_bam was updated to b77f7b516b17
Metabolomics
- dimspy_get_peaklists was updated to 657c7f8f26b5
- mspurity_averagefragspectra was updated to 406ae6769162
- mspurity_createdatabase was updated to fa84bfaab681
- mspurity_createmsp was updated to f98b4bb0fa58
- mspurity_dimspredictpuritysingle was updated to b563d5fe4fc0
- mspurity_filterfragspectra was updated to 0a0f22586cad
- mspurity_flagremove was updated to 816bac69e03e
- mspurity_frag4feature was updated to 31f64ff8320d
- mspurity_puritya was updated to 416460f611cc
- mspurity_purityx was updated to d84cc9960035
- mspurity_spectralmatching was updated to 01cbb99bca13
- hmdb_ms_search was updated to 29195cb5d378
- hmdb_ms_search was updated to 505956db90c5
- mixmodel4repeated_measures was updated to a3147e3d66e2
- camera_annotate was updated to 3d63a762954a
- xcms_export_samplemetadata was updated to 4ea32e46b2d6
- xcms_fillpeaks was updated to ec9aebabc1d2
- xcms_group was updated to 71572faf938e
- xcms_summary was updated to 444e3ed135e3
- nmr_preprocessing was updated to 6e837e9352a2
- normalization was updated to 221cbd549c40
- corr_table was updated to 2173ad5e7750
- idchoice was updated to bb19b1d15732
- tablemerge was updated to e44c5246247a
- recetox_aplcms_recover_weaker_signals was updated to a9bb2ccc53de
- xcms_refine was updated to 090b33a9981c
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
ChemicalToolBox
- mmpbsa_mmgbsa was updated to 12caa50c0d5f
BED
- bedtools was updated to 3e38c9b3214f
Metagenomic Analysis
- bio_hansel was updated to 1b88c1cf803d
- khmer_abundance_distribution_single was updated to 65b382bf9b7c
- khmer_count_median was updated to 570505540a7b
- khmer_extract_partitions was updated to 98b53d46e851
- khmer_filter_below_abundance_cutoff was updated to 00f7064c564b
- khmer_normalize_by_median was updated to 4d23ab83ea29
- khmer_partition was updated to 8388fe31d604
- metaeuk_easy_predict was updated to 860f8836c936
- recentrifuge was updated to 591175c0f051
- vegan_fisher_alpha was updated to f9966e11885b
- vegan_rarefaction was updated to b0d5976540e3
RAD-seq
- stacks_genotypes was updated to 00f4a4e553ae
- stacks_pstacks was updated to 7ebc7d229deb
Proteomics
- openms_cvinspector was updated to 3b585b370ab8
- openms_featurelinkerunlabeledqt was updated to bd07412009d1
- openms_mapalignerspectrum was updated to b5b03aacbfd9
- openms_openswathdecoygenerator was updated to 1814187218fe
- pyprophet_export was updated to bd693a71a50b
- pyprophet_protein was updated to 741138de814c
Collection Operations
- split_file_to_collection was updated to d150ac3d853d
Nanopore
- nanopolish_variants was updated to f1cb13497323
- medaka_consensus was updated to 22f6a0e7424f
- medaka_consensus was updated to 84dcccebad3d
- medaka_consensus was updated to eb1f4ba66dc6
- medaka_consensus_pipeline was updated to 35666d44fe7a
Statistics
- scipy_sparse was updated to 102c8bae2e9c
- scipy_sparse was updated to a2da4cebc584
- scipy_sparse was updated to e6893a4bcb7b
- iwtomics_testandplot was updated to 800c7e974e3b
Climate Analysis
- psy_maps was updated to e6d1e9d6b399
Convert Formats
- cpt_fix_aragorn was updated to f0f0ab9db43f
- bax2bam was updated to 4445939cacc9
- intermine_galaxy_exchange was updated to faef2b1622a3
- tooldistillator_summarize was updated to f3233d395549
Imaging
- cp_measure_object_size_shape was updated to 5ef26243a4a5
- imagej2_analyze_particles_binary was updated to aeb9bb864b8c
- imagej2_analyze_skeleton was updated to bb84f130a4e1
Annotation
- augustus was updated to bd0e53f3a891
- augustus_training was updated to f1e653756174
- hmmer_alimask was updated to 80c713789d13
- lorikeet_spoligotype was updated to f9c37d0b3002
Assembly
- spades_rnaviralspades was updated to 48cf45a53456
EMBOSS
- emboss_5 was updated to 8992d258e42f
Evolution
- iqtree was updated to 9b892d7f82cc
Filter and Sort
- bigwig_outlier_bed was updated to 2488bcddaf14
- gffcompare was updated to 3c5e024a18cf
Genome Diversity
- fasttree was updated to ef46a404db96
Mothur
- mothur_corr_axes was updated to 9db54b02c49d
- mothur_homova was updated to 9a215084d776
- mothur_tree_shared was updated to af2b5be87d4f
- mothur_unique_seqs was updated to c50d04c78ecb
Multiple Alignments
- clustalw was updated to d9c2b2fde6a3
- gecko was updated to 1de657a3198d
Phylogenetics
- hyphy_strike_ambigs was updated to 4e3212e05a8f
Single-cell
- scanpy_filter was updated to fc0321c000a3
- scanpy_inspect was updated to 4338bf96809e
- scanpy_normalize was updated to 146ae5d70b47
- scanpy_normalize was updated to f3ad813a58a3
- scanpy_plot was updated to 40812a65a78b
Variant Calling
- vcffilter was updated to 4bdc111b2470
- vcffilter was updated to 9442e22779ca
- vcfsort was updated to ee60203e68d9
- bcftools_annotate was updated to 2958e3b49ad4
- bcftools_query was updated to a850902cac64
- beacon2_biosamples was updated to 5fedf42a718b
- beacon2_datasets was updated to 1f9f549aa9ca
- beacon2_individuals was updated to b648eb72552c
- varscan_mpileup was updated to 1e667badbe87
- varscan_mpileup was updated to d7e6c347538d
Text Manipulation
- gff3_rebase was updated to 238981ed43b7
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
hca_sc_label_analysis_tools
- decoupler_pseudobulk was updated to f6040492b499
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