On 2024-10-13, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #481

Species abundance

• pampa_presabs was updated to 8d8aec182fb1

Graph/Display Data

• ggplot2_point was updated to a36551483a8f

Metabolomics

• matchms_metadata_export was updated to 8ff29dee9f26
• matchms_metadata_match was updated to 43d40415654c
• matchms_metadata_match was updated to 8a6bcc83171a
• matchms_networking was updated to 7c9599ecc2d3

Machine Learning

• sklearn_clf_metrics was updated to 15bcf1a7543b
• sklearn_data_preprocess was updated to 50b3e080cef0
• sklearn_data_preprocess was updated to add3c3a7c2b4
• sklearn_ensemble was updated to 4ecc0ce9d0a2
• sklearn_ensemble was updated to d868914bce73
• sklearn_feature_selection was updated to a7c667ff83fe
• sklearn_feature_selection was updated to ae0fafb53c1d
• sklearn_feature_selection was updated to ec25331946b8
• sklearn_generalized_linear was updated to c648d0716fb0
• sklearn_label_encoder was updated to 026ff1ea9f94
• sklearn_regression_metrics was updated to a152c1d23379
• sklearn_sample_generator was updated to 6b14fe097541
• sklearn_stacking_ensemble_models was updated to 2b679bb676be

RAD-seq

• stacks_stats was updated to 3c4c922a4fb0

Data Managers

• checkv_end_to_end was updated to e523d50513a4
• vibrant_build_database was updated to 200343b50d46
• virsorter_build_database was updated to 863ba94fb6e4

Metagenomic Analysis

• kraken_report was updated to 1902d3de4a4f
• extract_metaphlan_database was updated to 4b6ac1f0042b
• virsorter was updated to 76a7de225f06

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

ChemicalToolBox

• gmx_fep was updated to 19d1d4c30402
• gmx_merge_topology_files was updated to 33ed3c26b8c2
• gmx_merge_topology_files was updated to 930a403f7389
• gmx_sim was updated to 4c4f1761d31f
• gmx_sim was updated to 633f27174e8f
• gmx_sim was updated to b1061cc2653a
• gmx_trj was updated to b4705476229d

Proteomics

• eggnog_mapper was updated to a37df6f6b869
• hardklor was updated to 539f157784e7
• metaquantome_sample was updated to 40ca115438d2
• openms_clustermasstracesbyprecursor was updated to f61e132c4536
• openms_featurefindersuperhirn was updated to c42075bb5123
• openms_fuzzydiff was updated to ed9a839cbbda
• openms_maprttransformer was updated to fd6de4cdb9e9
• openms_nucleicacidsearchengine was updated to 00b91aaec050
• openms_rnpxlsearch was updated to 3dc6d9795d5b
• openms_ticcalculator was updated to 32667824b653

Nanopore

• nanopolish_eventalign was updated to 5c360c46eac7

BED

• bedtools was updated to 6bb3cd018203

FASTA/FASTQ

• ncbi_fcs_gx was updated to ed1ef564da41

Genome Diversity

• fasttree was updated to ef46a404db96

Mapping

• bwameth was updated to b4e6819b25ef
• star_fusion was updated to 0b44456754e2

Mothur

• mothur_chimera_check was updated to 4b57c3241cbc
• mothur_get_coremicrobiome was updated to 42244e3619cf
• mothur_get_otulabels was updated to b847275dfdf2
• mothur_remove_lineage was updated to 2a4d6c3d9b6d

RNA Analysis

• slamdunk was updated to 24657d5edede
• graphprot_predict_profile was updated to 7bbb7bf6304f

Variant Calling

• sansa_annotate was updated to 7ca2fba4be83

Virology

• freyja_aggregate_plot was updated to 948903a8555d
• freyja_boot was updated to 95e88f407e86
• freyja_demix was updated to 53b22b7dff19
• ivar_consensus was updated to 17f911830a8c

None

• data_manager_diamond_database_builder was updated to 4a08b7b76b78

deepTools

• deeptools_alignmentsieve was updated to e5a296ce8fbb

hca_sc_utils_viz

• dropletutils_read_10x was updated to d62a9aa0411e

hca_sc_label_analysis_tools

• decoupler_pseudobulk was updated to f321c60167d4

Apollo

• apollo_create_account was updated to a46a509386d3

Phylogenetics

• t_coffee was updated to c67bd5acbae2

Get Data

• ensembl_get_sequences was updated to 0fa1d1cc417d