On 2024-10-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #483

Data and Metadata Management

• data_paper_from_eml was updated to cfe884e53600

ChemicalToolBox

• qcxms_getres was updated to 89b026d67e9f
• qcxms_neutral_run was updated to 33b7a99b6de3
• qcxms_production_run was updated to 356f7916ac07

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

Get Data

• unipept was updated to 917fd3ebc223

Annotation

• agat was updated to d6ede73082da
• abritamr was updated to 468fd92deaaa

Assembly

• erga_ear was updated to 3dd6be0cd8dd

Graph/Display Data

• jbrowse2 was updated to cec274db51c0

Imaging

• bioimage_inference was updated to 9b8fc55cb9eb
• scale_image was updated to 72b8a6b7661b

Machine Learning

• black_forest_labs_flux was updated to 0d0561746128

None

• data_manager_motus was updated to 0370fe3cf518
• data_manager_build_kraken2_database was updated to 13851aefa67a
• data_manager_build_kraken2_database was updated to 1e34d2e3d285
• data_manager_build_kraken2_database was updated to 539b008cfe1c
• data_manager_build_kraken2_database was updated to 9002633b4737
• data_manager_build_kraken2_database was updated to 90b4d4f0a3a4
• data_manager_diamond_database_builder was updated to 4a08b7b76b78
• data_manager_ncbi_fcs_gx_database_downloader was updated to 6be6e6198ac3

Metagenomic Analysis

• tiara was updated to 66058890173e
• decontam was updated to 6621beb8bf3e
• mapseq was updated to 30e275ed0442
• profile2cami was updated to 6bc0c090133f

Convert Formats

• tooldistillator was updated to ea93df4b3df2
• tooldistillator_summarize was updated to 24eec94e6dfc

Evolution

• iqtree was updated to f87ac61981f0

FASTA/FASTQ

• fastp was updated to dbfc505896e9
• seqtk was updated to a019807f4e67

Genome Diversity

• fasttree was updated to ef46a404db96

Single-cell

• scanpy_cluster_reduce_dimension was updated to 8983e7a04ba7
• scanpy_filter was updated to 64388be6d510
• scanpy_inspect was updated to d1cd8c147809
• scanpy_inspect was updated to d86cb2ce311b
• scanpy_normalize was updated to 4bda4412b8c2
• scanpy_plot was updated to 62acdd96d4a0
• scanpy_remove_confounders was updated to 974bb00b2f43

Variant Calling

• freebayes was updated to 3e954e7125bf

Apollo

• apollo_iframe was updated to 29159d9ce6f0