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UseGalaxy.eu Tool Updates for 2024-11-03


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On 2024-11-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #485

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Metabolomics

QIIME 2

  • qiime2__alignment__mafft was updated to da8c194c5dc5
  • qiime2__alignment__mafft_add was updated to 793348b25298
  • qiime2__alignment__mask was updated to d71423249631
  • qiime2__composition__add_pseudocount was updated to e2822b9553cb
  • qiime2__composition__ancom was updated to c59b1d501ecf
  • qiime2__composition__ancombc was updated to 952686c734e9
  • qiime2__composition__tabulate was updated to cb1a60431256
  • qiime2__cutadapt__demux_paired was updated to 12dfb163a004
  • qiime2__cutadapt__demux_single was updated to 47652cda9695
  • qiime2__cutadapt__trim_paired was updated to e82bd0e0c7ad
  • qiime2__cutadapt__trim_single was updated to f8d5e0d4dfec
  • qiime2__dada2__denoise_ccs was updated to e73ff752eb45
  • qiime2__dada2__denoise_paired was updated to 933b92011b91
  • qiime2__dada2__denoise_pyro was updated to d9e75c4f54b9
  • qiime2__dada2__denoise_single was updated to 354f63459d37
  • qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
  • qiime2__deblur__denoise_16S was updated to b883cbea5623
  • qiime2__deblur__denoise_other was updated to 816ca3000a39
  • qiime2__deblur__visualize_stats was updated to 2e4eafd6f1f6
  • qiime2__demux__emp_paired was updated to 8edb4dc16d6e
  • qiime2__demux__emp_single was updated to 8e01d149bcdb
  • qiime2__demux__filter_samples was updated to 7595f1cbe5b7
  • qiime2__demux__subsample_paired was updated to 669e59a2a229
  • qiime2__demux__subsample_single was updated to 76384b6b3d90
  • qiime2__demux__summarize was updated to 1a13e87462a0
  • qiime2__diversity__adonis was updated to 4701a5b2b60d
  • qiime2__diversity__alpha was updated to 324ab5e710fa
  • qiime2__diversity__alpha_correlation was updated to 356a07706de8
  • qiime2__diversity__alpha_group_significance was updated to 96988c25ca01
  • qiime2__diversity__alpha_phylogenetic was updated to 5c0e7186a169
  • qiime2__diversity__alpha_rarefaction was updated to 22bfda174157
  • qiime2__diversity__beta was updated to 97a8f4d7b51d
  • qiime2__diversity__beta_correlation was updated to 93d88cdf089a
  • qiime2__diversity__beta_group_significance was updated to a0d20b8b681e
  • qiime2__diversity__beta_phylogenetic was updated to 394712a51004
  • qiime2__diversity__beta_rarefaction was updated to 1506cdb7caad
  • qiime2__diversity__bioenv was updated to 21ca3e4d0f06
  • qiime2__diversity__core_metrics was updated to 703db464b072
  • qiime2__diversity__core_metrics_phylogenetic was updated to 7fc930fc43cf
  • qiime2__diversity__filter_alpha_diversity was updated to 35e7602594d8
  • qiime2__diversity__filter_distance_matrix was updated to 6d85ed80f077
  • qiime2__diversity__mantel was updated to 39109e3921ee
  • qiime2__diversity__pcoa was updated to 0a6baa36f13c
  • qiime2__diversity__pcoa_biplot was updated to 41a52cf11f2d
  • qiime2__diversity__procrustes_analysis was updated to db458dd840c2
  • qiime2__diversity__tsne was updated to eccbb594cd17
  • qiime2__diversity__umap was updated to 9c7d4870e7c2
  • qiime2__diversity_lib__alpha_passthrough was updated to 71a10fd28964
  • qiime2__diversity_lib__beta_passthrough was updated to 7bc5ff8456ff
  • qiime2__diversity_lib__beta_phylogenetic_meta_passthrough was updated to a6205ca8caec
  • qiime2__diversity_lib__beta_phylogenetic_passthrough was updated to 5ab19b2ef7d8
  • qiime2__diversity_lib__bray_curtis was updated to 84b38b24a50e
  • qiime2__diversity_lib__faith_pd was updated to f3e3dfe874f0
  • qiime2__diversity_lib__jaccard was updated to df2902af58c1
  • qiime2__diversity_lib__observed_features was updated to 89d7fabc1120
  • qiime2__diversity_lib__pielou_evenness was updated to 3fff9475b959
  • qiime2__diversity_lib__shannon_entropy was updated to b2ccb5709bed
  • qiime2__diversity_lib__unweighted_unifrac was updated to 16f6f1bb70df
  • qiime2__diversity_lib__weighted_unifrac was updated to a166647c366a
  • qiime2__emperor__biplot was updated to 500d81d6d22d
  • qiime2__emperor__plot was updated to 64a9ebc05ae4
  • qiime2__emperor__procrustes_plot was updated to e2e3685e9ead
  • qiime2__feature_classifier__blast was updated to 24b72d60805e
  • qiime2__feature_classifier__classify_consensus_blast was updated to 0024a2733c77
  • qiime2__feature_classifier__classify_consensus_vsearch was updated to f965e6e951e7
  • qiime2__feature_classifier__classify_hybrid_vsearch_sklearn was updated to 6f3e4b4cd85f
  • qiime2__feature_classifier__classify_sklearn was updated to 771d8be25d7a
  • qiime2__feature_classifier__extract_reads was updated to 9db411be36ba
  • qiime2__feature_classifier__find_consensus_annotation was updated to b6121b90c568
  • qiime2__feature_classifier__fit_classifier_naive_bayes was updated to 1088a30ad72f
  • qiime2__feature_classifier__fit_classifier_sklearn was updated to b58536f29139
  • qiime2__feature_classifier__vsearch_global was updated to 7ca8ce947d06
  • qiime2__feature_table__core_features was updated to 0b1424ea3495
  • qiime2__feature_table__filter_features was updated to 10954feb4893
  • qiime2__feature_table__filter_features_conditionally was updated to 46bc11016e31
  • qiime2__feature_table__filter_samples was updated to 0597a61cb4b5
  • qiime2__feature_table__filter_seqs was updated to 8aec6a03bd3f
  • qiime2__feature_table__group was updated to 4acd06f54adc
  • qiime2__feature_table__heatmap was updated to 1579e3bbdc11
  • qiime2__feature_table__merge was updated to b5eb47c65e65
  • qiime2__feature_table__merge_seqs was updated to 6d3775f3a859
  • qiime2__feature_table__merge_taxa was updated to a96e86eac4e3
  • qiime2__feature_table__presence_absence was updated to d853b44a37b5
  • qiime2__feature_table__rarefy was updated to adf22a045073
  • qiime2__feature_table__relative_frequency was updated to eaada56f497a
  • qiime2__feature_table__rename_ids was updated to 8ae8ef4804fa
  • qiime2__feature_table__summarize was updated to d0f2249afe30
  • qiime2__feature_table__tabulate_seqs was updated to c4570ced1d88
  • qiime2__feature_table__transpose was updated to 8a3e71857c0a
  • qiime2__fragment_insertion__classify_otus_experimental was updated to 62764fe71186
  • qiime2__fragment_insertion__filter_features was updated to b27d577c13e0
  • qiime2__fragment_insertion__sepp was updated to a74f06287b8c
  • qiime2__longitudinal__anova was updated to 649a6f5a7ff8
  • qiime2__longitudinal__feature_volatility was updated to ecc06a63663d
  • qiime2__longitudinal__first_differences was updated to 2cb105e00a71
  • qiime2__longitudinal__first_distances was updated to 2c445317c0c1
  • qiime2__longitudinal__linear_mixed_effects was updated to d10f755328ea
  • qiime2__longitudinal__maturity_index was updated to 1945315814fc
  • qiime2__longitudinal__nmit was updated to 4facf6ad69be
  • qiime2__longitudinal__pairwise_differences was updated to 82847cdbf7fd
  • qiime2__longitudinal__pairwise_distances was updated to c02040f48a72
  • qiime2__longitudinal__plot_feature_volatility was updated to 2b93f7a91399
  • qiime2__longitudinal__volatility was updated to 646d4929b1ea
  • qiime2__metadata__distance_matrix was updated to 855d0a9bc79c
  • qiime2__metadata__shuffle_groups was updated to d310fdba1caf
  • qiime2__metadata__tabulate was updated to 9857be21dcaf
  • qiime2__phylogeny__align_to_tree_mafft_fasttree was updated to b552bc376487
  • qiime2__phylogeny__align_to_tree_mafft_iqtree was updated to ec98b720efc9
  • qiime2__phylogeny__align_to_tree_mafft_raxml was updated to 5d20cf180904
  • qiime2__phylogeny__fasttree was updated to 139fe749b0e5
  • qiime2__phylogeny__filter_table was updated to fa11896bafbb
  • qiime2__phylogeny__filter_tree was updated to d24d147a225d
  • qiime2__phylogeny__iqtree was updated to 77c94392c3e8
  • qiime2__phylogeny__iqtree_ultrafast_bootstrap was updated to e682a7a080a0
  • qiime2__phylogeny__midpoint_root was updated to 0a0e30476122
  • qiime2__phylogeny__raxml was updated to a40eb1afbd0f
  • qiime2__phylogeny__raxml_rapid_bootstrap was updated to 9d523344e9fb
  • qiime2__phylogeny__robinson_foulds was updated to 48893627c8f9
  • qiime2__quality_control__bowtie2_build was updated to 3a464de609d5
  • qiime2__quality_control__evaluate_composition was updated to d9c71e139c9b
  • qiime2__quality_control__evaluate_seqs was updated to f45d42427237
  • qiime2__quality_control__evaluate_taxonomy was updated to 8e6a404fb338
  • qiime2__quality_control__exclude_seqs was updated to 505d6f366518
  • qiime2__quality_control__filter_reads was updated to 8ea205bf4e7b
  • qiime2__quality_filter__q_score was updated to d786401d6619
  • qiime2__rescript__get_bv_brc_genome_features was updated to c735738cecca
  • qiime2__rescript__get_bv_brc_genomes was updated to 9dd05f5c60b9
  • qiime2__rescript__get_bv_brc_metadata was updated to f3cd42768927
  • qiime2__sample_classifier__classify_samples was updated to 6c18cbbf0f5b
  • qiime2__sample_classifier__classify_samples_from_dist was updated to 5f37765a9e5e
  • qiime2__sample_classifier__classify_samples_ncv was updated to ab96421e61c5
  • qiime2__sample_classifier__confusion_matrix was updated to 3164358cd72f
  • qiime2__sample_classifier__fit_classifier was updated to 2116b939ff07
  • qiime2__sample_classifier__fit_regressor was updated to e44450046a90
  • qiime2__sample_classifier__heatmap was updated to e2c3a69905fe
  • qiime2__sample_classifier__metatable was updated to 905113a20ca7
  • qiime2__sample_classifier__predict_classification was updated to 555cb8da4688
  • qiime2__sample_classifier__predict_regression was updated to e0913981ccc4
  • qiime2__sample_classifier__regress_samples was updated to a400ec06bae3
  • qiime2__sample_classifier__regress_samples_ncv was updated to c468c032ee23
  • qiime2__sample_classifier__scatterplot was updated to 22e510854bb2
  • qiime2__sample_classifier__split_table was updated to b0af6d277910
  • qiime2__sample_classifier__summarize was updated to e56a7f3e8b05
  • qiime2__stats__alpha_group_significance was updated to d6f4c80a29a2
  • qiime2__stats__collate_stats was updated to 10e19418eedb
  • qiime2__stats__facet_across was updated to caf764ebca30
  • qiime2__stats__facet_within was updated to 5349488971e9
  • qiime2__stats__mann_whitney_u_facet was updated to 3860c369685d
  • qiime2__stats__plot_rainclouds was updated to 0699c24331f4
  • qiime2__stats__prep_alpha_distribution was updated to c7ae38450ff9
  • qiime2__stats__wilcoxon_srt was updated to 3cbec5fc30ad
  • qiime2__stats__wilcoxon_srt_facet was updated to 181c3cf66bd8
  • qiime2__taxa__barplot was updated to 3da2f87501ee
  • qiime2__taxa__collapse was updated to e8ab6eff4cf8
  • qiime2__taxa__filter_seqs was updated to 526b35d5a4cd
  • qiime2__taxa__filter_table was updated to ca4a6aa29205
  • qiime2__vizard__boxplot was updated to 765052908e52
  • qiime2__vizard__heatmap was updated to 45c348a09fa0
  • qiime2__vizard__lineplot was updated to df9f1ff48c29
  • qiime2__vizard__scatterplot_2d was updated to acada7129b61
  • qiime2__vsearch__cluster_features_closed_reference was updated to 89648217a7ef
  • qiime2__vsearch__cluster_features_de_novo was updated to 31b630d08cda
  • qiime2__vsearch__cluster_features_open_reference was updated to 576b090ccd63
  • qiime2__vsearch__dereplicate_sequences was updated to d33fbe0e2c37
  • qiime2__vsearch__fastq_stats was updated to b770f74843a4
  • qiime2__vsearch__merge_pairs was updated to 421396209ac3
  • qiime2__vsearch__uchime_denovo was updated to c328a49a8ebf
  • qiime2__vsearch__uchime_ref was updated to 74b478765f80
  • qiime2_core__tools__export was updated to 40bcc0e139fa
  • qiime2_core__tools__import was updated to 8a0db69428c7

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  • data_manager_diamond_database_builder was updated to 4a08b7b76b78

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