On 2024-11-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #485

Get Data

• copernicusmarine was updated to 4edd010161e9

Metabolomics

• isolib was updated to 2b1118bce0b1
• mfassignr_findrecalseries was updated to 1b4881c150cc
• mfassignr_histnoise was updated to 9654573e6889
• mfassignr_isofiltr was updated to 1c199c3d5993
• mfassignr_kmdnoise was updated to a7a823839ae3
• mfassignr_mfassign was updated to 22c80f584bb1
• mfassignr_mfassigncho was updated to da64d663694b
• mfassignr_recal was updated to cfcf45ba58be
• mfassignr_recallist was updated to 6c7b17d38a1d
• mfassignr_snplot was updated to f19c0631b9e5
• recetox_aplcms_align_features was updated to ec196e27a61a
• recetox_aplcms_compute_clusters was updated to 59c393d35e0e
• recetox_aplcms_compute_template was updated to 50b9918aeff2
• recetox_aplcms_correct_time was updated to a82db010c53e
• recetox_aplcms_generate_feature_table was updated to 89178a72388a
• recetox_aplcms_merge_known_table was updated to b7c8a44b9cc1
• recetox_aplcms_recover_weaker_signals was updated to f92b1b64da93
• recetox_aplcms_remove_noise was updated to 7acd11ddc061

QIIME 2

• qiime2__alignment__mafft was updated to da8c194c5dc5
• qiime2__alignment__mafft_add was updated to 793348b25298
• qiime2__alignment__mask was updated to d71423249631
• qiime2__composition__add_pseudocount was updated to e2822b9553cb
• qiime2__composition__ancom was updated to c59b1d501ecf
• qiime2__composition__ancombc was updated to 952686c734e9
• qiime2__composition__tabulate was updated to cb1a60431256
• qiime2__cutadapt__demux_paired was updated to 12dfb163a004
• qiime2__cutadapt__demux_single was updated to 47652cda9695
• qiime2__cutadapt__trim_paired was updated to e82bd0e0c7ad
• qiime2__cutadapt__trim_single was updated to f8d5e0d4dfec
• qiime2__dada2__denoise_ccs was updated to e73ff752eb45
• qiime2__dada2__denoise_paired was updated to 933b92011b91
• qiime2__dada2__denoise_pyro was updated to d9e75c4f54b9
• qiime2__dada2__denoise_single was updated to 354f63459d37
• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623
• qiime2__deblur__denoise_other was updated to 816ca3000a39
• qiime2__deblur__visualize_stats was updated to 2e4eafd6f1f6
• qiime2__demux__emp_paired was updated to 8edb4dc16d6e
• qiime2__demux__emp_single was updated to 8e01d149bcdb
• qiime2__demux__filter_samples was updated to 7595f1cbe5b7
• qiime2__demux__subsample_paired was updated to 669e59a2a229
• qiime2__demux__subsample_single was updated to 76384b6b3d90
• qiime2__demux__summarize was updated to 1a13e87462a0
• qiime2__diversity__adonis was updated to 4701a5b2b60d
• qiime2__diversity__alpha was updated to 324ab5e710fa
• qiime2__diversity__alpha_correlation was updated to 356a07706de8
• qiime2__diversity__alpha_group_significance was updated to 96988c25ca01
• qiime2__diversity__alpha_phylogenetic was updated to 5c0e7186a169
• qiime2__diversity__alpha_rarefaction was updated to 22bfda174157
• qiime2__diversity__beta was updated to 97a8f4d7b51d
• qiime2__diversity__beta_correlation was updated to 93d88cdf089a
• qiime2__diversity__beta_group_significance was updated to a0d20b8b681e
• qiime2__diversity__beta_phylogenetic was updated to 394712a51004
• qiime2__diversity__beta_rarefaction was updated to 1506cdb7caad
• qiime2__diversity__bioenv was updated to 21ca3e4d0f06
• qiime2__diversity__core_metrics was updated to 703db464b072
• qiime2__diversity__core_metrics_phylogenetic was updated to 7fc930fc43cf
• qiime2__diversity__filter_alpha_diversity was updated to 35e7602594d8
• qiime2__diversity__filter_distance_matrix was updated to 6d85ed80f077
• qiime2__diversity__mantel was updated to 39109e3921ee
• qiime2__diversity__pcoa was updated to 0a6baa36f13c
• qiime2__diversity__pcoa_biplot was updated to 41a52cf11f2d
• qiime2__diversity__procrustes_analysis was updated to db458dd840c2
• qiime2__diversity__tsne was updated to eccbb594cd17
• qiime2__diversity__umap was updated to 9c7d4870e7c2
• qiime2__diversity_lib__alpha_passthrough was updated to 71a10fd28964
• qiime2__diversity_lib__beta_passthrough was updated to 7bc5ff8456ff
• qiime2__diversity_lib__beta_phylogenetic_meta_passthrough was updated to a6205ca8caec
• qiime2__diversity_lib__beta_phylogenetic_passthrough was updated to 5ab19b2ef7d8
• qiime2__diversity_lib__bray_curtis was updated to 84b38b24a50e
• qiime2__diversity_lib__faith_pd was updated to f3e3dfe874f0
• qiime2__diversity_lib__jaccard was updated to df2902af58c1
• qiime2__diversity_lib__observed_features was updated to 89d7fabc1120
• qiime2__diversity_lib__pielou_evenness was updated to 3fff9475b959
• qiime2__diversity_lib__shannon_entropy was updated to b2ccb5709bed
• qiime2__diversity_lib__unweighted_unifrac was updated to 16f6f1bb70df
• qiime2__diversity_lib__weighted_unifrac was updated to a166647c366a
• qiime2__emperor__biplot was updated to 500d81d6d22d
• qiime2__emperor__plot was updated to 64a9ebc05ae4
• qiime2__emperor__procrustes_plot was updated to e2e3685e9ead
• qiime2__feature_classifier__blast was updated to 24b72d60805e
• qiime2__feature_classifier__classify_consensus_blast was updated to 0024a2733c77
• qiime2__feature_classifier__classify_consensus_vsearch was updated to f965e6e951e7
• qiime2__feature_classifier__classify_hybrid_vsearch_sklearn was updated to 6f3e4b4cd85f
• qiime2__feature_classifier__classify_sklearn was updated to 771d8be25d7a
• qiime2__feature_classifier__extract_reads was updated to 9db411be36ba
• qiime2__feature_classifier__find_consensus_annotation was updated to b6121b90c568
• qiime2__feature_classifier__fit_classifier_naive_bayes was updated to 1088a30ad72f
• qiime2__feature_classifier__fit_classifier_sklearn was updated to b58536f29139
• qiime2__feature_classifier__vsearch_global was updated to 7ca8ce947d06
• qiime2__feature_table__core_features was updated to 0b1424ea3495
• qiime2__feature_table__filter_features was updated to 10954feb4893
• qiime2__feature_table__filter_features_conditionally was updated to 46bc11016e31
• qiime2__feature_table__filter_samples was updated to 0597a61cb4b5
• qiime2__feature_table__filter_seqs was updated to 8aec6a03bd3f
• qiime2__feature_table__group was updated to 4acd06f54adc
• qiime2__feature_table__heatmap was updated to 1579e3bbdc11
• qiime2__feature_table__merge was updated to b5eb47c65e65
• qiime2__feature_table__merge_seqs was updated to 6d3775f3a859
• qiime2__feature_table__merge_taxa was updated to a96e86eac4e3
• qiime2__feature_table__presence_absence was updated to d853b44a37b5
• qiime2__feature_table__rarefy was updated to adf22a045073
• qiime2__feature_table__relative_frequency was updated to eaada56f497a
• qiime2__feature_table__rename_ids was updated to 8ae8ef4804fa
• qiime2__feature_table__summarize was updated to d0f2249afe30
• qiime2__feature_table__tabulate_seqs was updated to c4570ced1d88
• qiime2__feature_table__transpose was updated to 8a3e71857c0a
• qiime2__fragment_insertion__classify_otus_experimental was updated to 62764fe71186
• qiime2__fragment_insertion__filter_features was updated to b27d577c13e0
• qiime2__fragment_insertion__sepp was updated to a74f06287b8c
• qiime2__longitudinal__anova was updated to 649a6f5a7ff8
• qiime2__longitudinal__feature_volatility was updated to ecc06a63663d
• qiime2__longitudinal__first_differences was updated to 2cb105e00a71
• qiime2__longitudinal__first_distances was updated to 2c445317c0c1
• qiime2__longitudinal__linear_mixed_effects was updated to d10f755328ea
• qiime2__longitudinal__maturity_index was updated to 1945315814fc
• qiime2__longitudinal__nmit was updated to 4facf6ad69be
• qiime2__longitudinal__pairwise_differences was updated to 82847cdbf7fd
• qiime2__longitudinal__pairwise_distances was updated to c02040f48a72
• qiime2__longitudinal__plot_feature_volatility was updated to 2b93f7a91399
• qiime2__longitudinal__volatility was updated to 646d4929b1ea
• qiime2__metadata__distance_matrix was updated to 855d0a9bc79c
• qiime2__metadata__shuffle_groups was updated to d310fdba1caf
• qiime2__metadata__tabulate was updated to 9857be21dcaf
• qiime2__phylogeny__align_to_tree_mafft_fasttree was updated to b552bc376487
• qiime2__phylogeny__align_to_tree_mafft_iqtree was updated to ec98b720efc9
• qiime2__phylogeny__align_to_tree_mafft_raxml was updated to 5d20cf180904
• qiime2__phylogeny__fasttree was updated to 139fe749b0e5
• qiime2__phylogeny__filter_table was updated to fa11896bafbb
• qiime2__phylogeny__filter_tree was updated to d24d147a225d
• qiime2__phylogeny__iqtree was updated to 77c94392c3e8
• qiime2__phylogeny__iqtree_ultrafast_bootstrap was updated to e682a7a080a0
• qiime2__phylogeny__midpoint_root was updated to 0a0e30476122
• qiime2__phylogeny__raxml was updated to a40eb1afbd0f
• qiime2__phylogeny__raxml_rapid_bootstrap was updated to 9d523344e9fb
• qiime2__phylogeny__robinson_foulds was updated to 48893627c8f9
• qiime2__quality_control__bowtie2_build was updated to 3a464de609d5
• qiime2__quality_control__evaluate_composition was updated to d9c71e139c9b
• qiime2__quality_control__evaluate_seqs was updated to f45d42427237
• qiime2__quality_control__evaluate_taxonomy was updated to 8e6a404fb338
• qiime2__quality_control__exclude_seqs was updated to 505d6f366518
• qiime2__quality_control__filter_reads was updated to 8ea205bf4e7b
• qiime2__quality_filter__q_score was updated to d786401d6619
• qiime2__rescript__get_bv_brc_genome_features was updated to c735738cecca
• qiime2__rescript__get_bv_brc_genomes was updated to 9dd05f5c60b9
• qiime2__rescript__get_bv_brc_metadata was updated to f3cd42768927
• qiime2__sample_classifier__classify_samples was updated to 6c18cbbf0f5b
• qiime2__sample_classifier__classify_samples_from_dist was updated to 5f37765a9e5e
• qiime2__sample_classifier__classify_samples_ncv was updated to ab96421e61c5
• qiime2__sample_classifier__confusion_matrix was updated to 3164358cd72f
• qiime2__sample_classifier__fit_classifier was updated to 2116b939ff07
• qiime2__sample_classifier__fit_regressor was updated to e44450046a90
• qiime2__sample_classifier__heatmap was updated to e2c3a69905fe
• qiime2__sample_classifier__metatable was updated to 905113a20ca7
• qiime2__sample_classifier__predict_classification was updated to 555cb8da4688
• qiime2__sample_classifier__predict_regression was updated to e0913981ccc4
• qiime2__sample_classifier__regress_samples was updated to a400ec06bae3
• qiime2__sample_classifier__regress_samples_ncv was updated to c468c032ee23
• qiime2__sample_classifier__scatterplot was updated to 22e510854bb2
• qiime2__sample_classifier__split_table was updated to b0af6d277910
• qiime2__sample_classifier__summarize was updated to e56a7f3e8b05
• qiime2__stats__alpha_group_significance was updated to d6f4c80a29a2
• qiime2__stats__collate_stats was updated to 10e19418eedb
• qiime2__stats__facet_across was updated to caf764ebca30
• qiime2__stats__facet_within was updated to 5349488971e9
• qiime2__stats__mann_whitney_u_facet was updated to 3860c369685d
• qiime2__stats__plot_rainclouds was updated to 0699c24331f4
• qiime2__stats__prep_alpha_distribution was updated to c7ae38450ff9
• qiime2__stats__wilcoxon_srt was updated to 3cbec5fc30ad
• qiime2__stats__wilcoxon_srt_facet was updated to 181c3cf66bd8
• qiime2__taxa__barplot was updated to 3da2f87501ee
• qiime2__taxa__collapse was updated to e8ab6eff4cf8
• qiime2__taxa__filter_seqs was updated to 526b35d5a4cd
• qiime2__taxa__filter_table was updated to ca4a6aa29205
• qiime2__vizard__boxplot was updated to 765052908e52
• qiime2__vizard__heatmap was updated to 45c348a09fa0
• qiime2__vizard__lineplot was updated to df9f1ff48c29
• qiime2__vizard__scatterplot_2d was updated to acada7129b61
• qiime2__vsearch__cluster_features_closed_reference was updated to 89648217a7ef
• qiime2__vsearch__cluster_features_de_novo was updated to 31b630d08cda
• qiime2__vsearch__cluster_features_open_reference was updated to 576b090ccd63
• qiime2__vsearch__dereplicate_sequences was updated to d33fbe0e2c37
• qiime2__vsearch__fastq_stats was updated to b770f74843a4
• qiime2__vsearch__merge_pairs was updated to 421396209ac3
• qiime2__vsearch__uchime_denovo was updated to c328a49a8ebf
• qiime2__vsearch__uchime_ref was updated to 74b478765f80
• qiime2_core__tools__export was updated to 40bcc0e139fa
• qiime2_core__tools__import was updated to 8a0db69428c7

ChemicalToolBox

• alphafold2 was updated to 3f188450ca4f

Convert Formats

• hictk was updated to af0d9df0641e
• ucsc_twobittofa was updated to e9bbe2f71784

Machine Learning

• black_forest_labs_flux was updated to 3e22bda128be
• keras_model_config was updated to e474e701d58b

Single-cell

• alevin was updated to b0fe3e482cb7
• music_compare was updated to 7009462b958f
• music_construct_eset was updated to 7022ce682d2f
• music_deconvolution was updated to e7b79fd6b595
• music_inspect_eset was updated to 94c0b3baf8fd
• music_manipulate_eset was updated to 192355cd1641
• scanpy_remove_confounders was updated to c5541bfb8feb

Annotation

• busco was updated to e5c372c91e46

Genome Diversity

• fasttree was updated to ef46a404db96

Graph/Display Data

• ggplot2_histogram was updated to 536078949ae4
• pretext_snapshot was updated to 326098bc19cc

Metagenomic Analysis

• ampvis2_alpha_diversity was updated to 77000428c613
• srst2 was updated to f995ba9f1caa

Send Data

• ena_upload was updated to e1b3b37aa69f

None

• data_manager_diamond_database_builder was updated to 4a08b7b76b78

hca_sc_label_analysis_tools

• decoupler_pseudobulk was updated to ef054892d47f

Imaging

• squidpy_scatter was updated to b84c324b58bd
• squidpy_spatial was updated to 2a5036c29889