On 2024-11-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #486
Get Data
- obis_data was updated to 5bae75c49f2e
Biodiversity data exploration
- obisindicators was updated to 4e7c1fb5e894
- obisindicators was updated to dc187fe78055
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
- qiime2_core__tools__import_fastq was updated to 1c3937219d27
FASTA/FASTQ
- gfastats was updated to f4a3eff8ab85
- seqkit_fx2tab was updated to 2e60cd811bd2
- seqkit_locate was updated to 95ef41cc06f7
- seqkit_sort was updated to 29ef2c5ec205
- seqkit_stats was updated to 795cd16de38f
- seqkit_translate was updated to 1936d097808a
Single-cell
- music_compare was updated to 4447ed460308
- music_compare was updated to d817b3807562
- music_construct_eset was updated to 282819d09a4f
- music_construct_eset was updated to 48f0fb3061b1
- music_deconvolution was updated to 2ba99a52bd44
- music_deconvolution was updated to 8cd2ecfa2e61
- music_inspect_eset was updated to 7705cc75ac18
- music_inspect_eset was updated to fde4c972e7c5
- music_manipulate_eset was updated to 22232092be53
- music_manipulate_eset was updated to b5185a4f5209
- anndata_export was updated to 7a6655aa6eb2
- anndata_import was updated to 6f143dfe902a
- anndata_inspect was updated to 14c576ea6148
- anndata_manipulate was updated to c4209ea387d4
- cosg was updated to fe5996e87b41
- modify_loom was updated to db575b4c8b22
- raceid_clustering was updated to 49776718ae90
- raceid_filtnormconf was updated to 8b917923f7d4
- raceid_inspectclusters was updated to c7ddb719554d
- raceid_inspecttrajectory was updated to 6e90c8adf84f
- raceid_trajectory was updated to 2bfd55b87af3
- sceasy_convert was updated to 5c9b16bdbd5e
- sinto_barcode was updated to fb61eb03e313
- sinto_fragments was updated to 6f66f523a9b7
- snapatac2_clustering was updated to d3ea0ba3d066
- snapatac2_peaks_and_motif was updated to 64fa083411f1
- snapatac2_plotting was updated to 05bd4db20227
- snapatac2_preprocessing was updated to c5c94e01a1b5
Metabolomics
- dimspy_hdf5_to_txt was updated to ea439d85b6c5
Assembly
- fastk_fastk was updated to 9f8c786bd424
- trycycler_cluster was updated to 0368ac680e70
- trycycler_consensus was updated to a7ed21de23fe
- trycycler_partition was updated to 7673a6c920b2
- trycycler_reconcile_msa was updated to ed312479d9eb
- trycycler_subsample was updated to b9b0246a2be3
Convert Formats
- bam2fastx was updated to 0bfdf46e5e31
- ucsc_wigtobigwig was updated to fa49730d1d4b
Genome Diversity
- fasttree was updated to ef46a404db96
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to 952abbc4b1de
- hicexplorer_chicdifferentialtest was updated to f1c35f3f310d
- hicexplorer_chicexportdata was updated to cab616fe7e64
- hicexplorer_chicplotviewpoint was updated to b9ab56aecd18
- hicexplorer_chicqualitycontrol was updated to 9ea228a9afc8
- hicexplorer_chicsignificantinteractions was updated to f8320df1866b
- hicexplorer_chicviewpoint was updated to c4ed35f4f77f
- hicexplorer_chicviewpointbackgroundmodel was updated to c354255ff705
- hicexplorer_hicadjustmatrix was updated to 782bdcb775fb
- hicexplorer_hicaggregatecontacts was updated to 63c8377c58b3
- hicexplorer_hicaverageregions was updated to fe3aa71590d5
- hicexplorer_hicbuildmatrix was updated to 0f611e7d7858
- hicexplorer_hiccomparematrices was updated to 4f9305d3bb34
- hicexplorer_hiccompartmentspolarization was updated to a315574104c6
- hicexplorer_hicconvertformat was updated to a83732c79949
- hicexplorer_hiccorrectmatrix was updated to 30d7390bc918
- hicexplorer_hiccorrelate was updated to cd40ca76865a
- hicexplorer_hicdetectloops was updated to bf9379529c3e
- hicexplorer_hicdifferentialtad was updated to 07dd436ea686
- hicexplorer_hicfindrestrictionsites was updated to f1b3902f8baf
- hicexplorer_hicfindtads was updated to 11de0d28ab30
- hicexplorer_hichyperoptdetectloops was updated to bb8849fca57c
- hicexplorer_hicinfo was updated to b0f33533181d
- hicexplorer_hicinterintratad was updated to 32173084d53f
- hicexplorer_hicmergedomains was updated to 4b194e675916
- hicexplorer_hicmergeloops was updated to 910c6a1c3a27
- hicexplorer_hicmergematrixbins was updated to f72063d9426b
- hicexplorer_hicnormalize was updated to 2aa5b6b65197
- hicexplorer_hicpca was updated to 1da5f169b491
- hicexplorer_hicplotaverageregions was updated to 9b383d429659
- hicexplorer_hicplotdistvscounts was updated to 06ced663d24f
- hicexplorer_hicplotmatrix was updated to f741330d4a71
- hicexplorer_hicplotsvl was updated to beb5b5917d2f
- hicexplorer_hicplotviewpoint was updated to e285920f8585
- hicexplorer_hicquickqc was updated to 5cbd7a902a8d
- hicexplorer_hicsummatrices was updated to f81750434d70
- hicexplorer_hictransform was updated to 1de2276f633f
- hicexplorer_hicvalidatelocations was updated to cef9fb4ece1c
Mapping
- pbmm2 was updated to 7100ed4a31a2
Metagenomic Analysis
- name2taxid was updated to b83613ee99ad
- profile2cami was updated to d38b9fdf04e0
Mothur
- mothur_chimera_perseus was updated to 0f3baac24045
RNA Analysis
- seurat_clustering was updated to 51eb02d9b17a
- seurat_create was updated to af8bdeb89691
- seurat_data was updated to 4ec52a83ec82
- seurat_integrate was updated to 74fa68f4e579
- seurat_plot was updated to fee4b4eb0ef5
- seurat_preprocessing was updated to 6bccf5f85f92
- seurat_reduce_dimension was updated to 46ed93e8da30
Variant Calling
- bcftools_convert_from_vcf was updated to b8e9da766b0f
- bcftools_convert_from_vcf was updated to cacc9970727a
Virology
- irma was updated to a9a78a68d6c8
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
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