On 2024-12-08, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #490
Climate Analysis
- harmonize_insitu_to_netcdf was updated to 15260949227d
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Mapping
- rgrnastar was updated to 53255f6eecfc
- rna_starsolo was updated to 381a32c51141
Convert Formats
- msconvert was updated to ab6c14374bc0
Assembly
- flye was updated to cd11366d92cf
- fastk_fastk was updated to 8049cb5537b7
Machine Learning
- black_forest_labs_flux was updated to 7939ae8c5fd5
Evolution
- quicktree was updated to 1e89a460d1bd
Genome Diversity
- fasttree was updated to ef46a404db96
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to c3ffb2c1e314
- hicexplorer_chicdifferentialtest was updated to 45828071edc3
- hicexplorer_chicexportdata was updated to 1a31e75e979e
- hicexplorer_chicplotviewpoint was updated to 920526260066
- hicexplorer_chicqualitycontrol was updated to f6a169b5e43b
- hicexplorer_chicsignificantinteractions was updated to ff1af7bac1cb
- hicexplorer_chicviewpoint was updated to 37125838e360
- hicexplorer_chicviewpointbackgroundmodel was updated to 6f8debcf2ac9
- hicexplorer_hicadjustmatrix was updated to e8760fc0e29b
- hicexplorer_hicaggregatecontacts was updated to 30677e95bc89
- hicexplorer_hicaverageregions was updated to 3240e8a7c54f
- hicexplorer_hicbuildmatrix was updated to d9967770de96
- hicexplorer_hiccomparematrices was updated to 5dd1aae12f03
- hicexplorer_hiccompartmentspolarization was updated to 87eb9c58cd19
- hicexplorer_hicconvertformat was updated to 574f295b5ba4
- hicexplorer_hiccorrectmatrix was updated to 937b7b9832d0
- hicexplorer_hiccorrelate was updated to 0f5786ffa10d
- hicexplorer_hicdetectloops was updated to 4375e25de06a
- hicexplorer_hicdifferentialtad was updated to 4977f65da0ff
- hicexplorer_hicfindrestrictionsites was updated to f0b1bd38745a
- hicexplorer_hicfindtads was updated to 478aacfbaa37
- hicexplorer_hichyperoptdetectloops was updated to 3e5c86c2f80d
- hicexplorer_hicinfo was updated to 7fbd6feba1ca
- hicexplorer_hicinterintratad was updated to 908fa330b93b
- hicexplorer_hicmergedomains was updated to febfddb0b3e8
- hicexplorer_hicmergeloops was updated to 1d9799f4b854
- hicexplorer_hicmergematrixbins was updated to 9d93c8fbe0a6
- hicexplorer_hicnormalize was updated to 5e83c077e31d
- hicexplorer_hicpca was updated to f86ca478c6af
- hicexplorer_hicplotaverageregions was updated to 3f1b286a5c34
- hicexplorer_hicplotdistvscounts was updated to 89cfe7de541b
- hicexplorer_hicplotmatrix was updated to 025a128652dc
- hicexplorer_hicplotsvl was updated to 1602cc5b673c
- hicexplorer_hicplotviewpoint was updated to a10fce08c2dc
- hicexplorer_hicquickqc was updated to b13e7a200525
- hicexplorer_hicsummatrices was updated to d74cf4a61d65
- hicexplorer_hictransform was updated to df64cc4dfb4d
- hicexplorer_hicvalidatelocations was updated to d890828ab02a
Metagenomic Analysis
- concoct_merge_cut_up_clustering was updated to 713189575b8b
- dada2_assigntaxonomyaddspecies was updated to 3a89c3f99f3d
- dada2_primercheck was updated to 74ec28dbdf17
- dada2_removebimeradenovo was updated to 1770d188f72d
- phyloseq_from_biom was updated to 1feea247d08a
- phyloseq_from_dada2 was updated to 40ebae5bbe51
- phyloseq_plot_ordination was updated to c35e0075c7a2
- phyloseq_plot_richness was updated to 1a6c2cc92c6e
Variant Calling
- ucsc_fatovcf was updated to a40dd4fd3096
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
- data_manager_mapseq was updated to 19ef193d1316
hca_sc_scanpy_tools
- scanpy_find_variable_genes was updated to d88a29e2eba6
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