On 2025-01-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #497

Quality Control

• multiqc was updated to a7e081ceb76a

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

Proteomics

• pyprophet_export was updated to 2bc6bbf651b9

Imaging

• binary2labelimage was updated to 6c92ac9ce868

Annotation

• compleasm was updated to 7109a27a11db
• staramr was updated to 6edfb4b6db85

None

• data_manager_build_kraken2_database was updated to 201eff2131d6
• data_manager_build_staramr was updated to 3658cf4b6fd2
• data_manager_diamond_database_builder was updated to 4a08b7b76b78

EMBOSS

• emboss_needle was updated to 2f0dc62d0a19
• emboss_needleall was updated to 76373359fce2

Metagenomic Analysis

• binette was updated to 70b492856e17
• metabat2 was updated to f375b4f6ef57
• metabat2_jgi_summarize_bam_contig_depths was updated to 00e3b4ef7e0c
• phyloseq_add_rank_names was updated to 2238658d7663
• phyloseq_from_biom was updated to 599a3fb9a953
• phyloseq_from_dada2 was updated to ae4d404a8227
• phyloseq_plot_bar was updated to 9302992205ad
• phyloseq_plot_ordination was updated to eab0b21652c4
• phyloseq_plot_richness was updated to 4faa9c663b38

Phylogenetics

• squirrel_phylo was updated to b64098b87ea0
• squirrel_qc was updated to f63d24309f49

Variant Calling

• cnvkit_access was updated to 45805c2763d2
• cnvkit_antitarget was updated to 98a7ce7d42b8
• cnvkit_autobin was updated to 9940a098cfc8
• cnvkit_batch was updated to 71f99b30a7f1
• cnvkit_breaks was updated to 7a3b124bbe23
• cnvkit_call was updated to 519d405738ee
• cnvkit_coverage was updated to 9fd2e592743f
• cnvkit_diagram was updated to ce2ed9352a40
• cnvkit_export_bed was updated to 9aeac47c89d1
• cnvkit_export_cdt was updated to 5406089c2db7
• cnvkit_export_jtv was updated to d30f7b4c0722
• cnvkit_export_nexus_basic was updated to 5f3e6356a8de
• cnvkit_export_nexus_ogt was updated to 9ca92159a21a
• cnvkit_export_seg was updated to dbdb21b1d395
• cnvkit_export_vcf was updated to d06c8938713a
• cnvkit_fix was updated to b02eb4c918f2
• cnvkit_genemetrics was updated to 86662c490315
• cnvkit_heatmap was updated to c76ce257611a
• cnvkit_reference was updated to ee80db1d39c0
• cnvkit_scatter was updated to f96c79d645b6
• cnvkit_segment was updated to c576f0480c66
• cnvkit_segmetrics was updated to b28346e240f3
• cnvkit_sex was updated to 94975590f584
• cnvkit_target was updated to d14cfbdd41f0
• cnvkit_theta was updated to b10391f2e328
• snippy was updated to 08d22d220254

Virology

• irma was updated to eddd9befb66d

hca_sc_scanpy_tools

• scanpy_read_10x was updated to 72cf1c8f5870
• scanpy_regress_variable was updated to b8f8890d95e4
• scanpy_run_dpt was updated to ea6bea16d0e2
• scanpy_run_fdg was updated to 425f2e046231

RNA Analysis

• graphprot_predict_profile was updated to 4ad83aed5c3c