On 2025-02-20, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #501

Quality Control

• multiqc was updated to 31c42a2c02d3
• multiqc was updated to d2aaac19f42f

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

FASTA/FASTQ

• bbtools_bbduk was updated to 55e500606bbe
• bbtools_bbmerge was updated to 08b2f8e6846d
• bbtools_bbnorm was updated to 5f047a0d4c2e
• bbtools_tadpole was updated to 7ad0f4bfa923
• sickle was updated to 9108bd9450cb

Proteomics

• cardinal_classification was updated to 42f6e30b00f2

SAM/BAM

• sambamba_flagstat was updated to cfd6e76541ff
• sambamba_markdup was updated to a348429b6fec
• sambamba_merge was updated to 66a7ee77d7e3
• sambamba_sort was updated to 6aa99e436263

Machine Learning

• tabpfn was updated to e7b4afedc471

Metagenomic Analysis

• binette was updated to 7834132949bc
• biobox_add_taxid was updated to 7a9dd5efc076
• cami_amber_convert was updated to 40d5ea45b73f
• cami_amber_convert was updated to fac3911ad3b6
• checkm2 was updated to 0f5f7fa9c08f
• dada2_assigntaxonomyaddspecies was updated to 705d26fbea02
• dada2_dada was updated to b35a5e8ff0fe
• dada2_filterandtrim was updated to 00e0347751b1
• dada2_learnerrors was updated to a14a18a47c36
• dada2_makesequencetable was updated to ebd632e95aae
• dada2_mergepairs was updated to 646c58820267
• dada2_plotcomplexity was updated to 6f06d501b7e6
• dada2_plotqualityprofile was updated to 4e469b758915
• dada2_primercheck was updated to ee763baa80c3
• dada2_removebimeradenovo was updated to efe26de231ec
• dada2_seqcounts was updated to 390bc2645138
• fairy_cov was updated to d94e49509dac
• fairy_sketch was updated to a8806f3d45bb
• nonpareil was updated to 9016f67b716f

Assembly

• fastk_fastk was updated to 33079540e88f
• fastk_histex was updated to 1fcb1a2950cb
• fastk_histex was updated to 3e5642ac5620
• fastk_logex was updated to ec82f2b95e89
• fastk_logex was updated to fb6b6d5e6bd5
• megahit was updated to ab208c87d973
• raven was updated to 27a172326f4e

Imaging

• cp_common was updated to 0b7db679fff8

Annotation

• deeparg_predict was updated to 3953324f6d31
• deeparg_short_reads was updated to 558018b49a4c
• ppanggolin_all was updated to a83148dac159
• ppanggolin_msa was updated to 76170454dc91
• staramr was updated to 9e8cf8dd6955

None

• data_manager_deeparg was updated to 4a72de3780aa
• data_manager_diamond_database_builder was updated to 4a08b7b76b78

Evolution

• quicktree was updated to 5c2ac7f640ab

HiCExplorer

• hicexplorer_hicplotaverageregions was updated to 2371fad10021

Mapping

• bbtools_bbmap was updated to 20ab37575227

Nanopore

• clair3 was updated to c9218b9dc7f0
• medaka_consensus was updated to 0413e62b757a
• porechop was updated to a2899db6bd6e

Phylogenetics

• squirrel_phylo was updated to eaa0b1e114eb
• squirrel_qc was updated to cd668d67431e

Send Data

• ena_upload was updated to 440074098911

Single-cell

• anndata2ri was updated to ac675f28acfc
• cluster_analyze_embed_muon was updated to 6c971179bb3f
• mudata_import_export was updated to 73a8649345f7
• plot_muon was updated to 6446eb1889da
• preprocess_muon was updated to bd31b5d2130a

Text Manipulation

• table_compute was updated to 56a8da1f2243

Variant Calling

• bbtools_callvariants was updated to b4279a293312

Virology

• freyja_aggregate_plot was updated to 640c0b8cc8bf
• freyja_boot was updated to cd5d77d118f2
• freyja_demix was updated to e7a2086a0f03
• freyja_variants was updated to 11c062caec10
• ivar_consensus was updated to 196d126cd016
• ivar_filtervariants was updated to d328d99d7396
• ivar_removereads was updated to 9f4805c61d29
• ivar_trim was updated to c9ef01b1cfba
• ivar_variants was updated to 41c7ba073a9b

Get Data

• ensembl_get_feature_info was updated to 37cdb55f5258
• ensembl_get_genetree was updated to 935de83b470b
• ensembl_get_sequences was updated to c79ce2342f1e