On 2025-03-30, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #507

Species abundance

• pampa_presabs was updated to 07b081730994

Text Manipulation

• text_processing was updated to 6073bb457ec0

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

ChemicalToolBox

• biopdb_align_and_rmsd was updated to a40867ca69fe

Machine Learning

• sklearn_pairwise_metrics was updated to 7366e5108e9f
• tabpfn was updated to 49b4ee0d0965

Metagenomic Analysis

• qiime2_dbotu_q2 was updated to f0454b7881f4
• semibin was updated to b5a7583b8db0
• semibin_bin was updated to 2d1940ae33c2
• semibin_concatenate_fasta was updated to e0aae2cd891e
• semibin_generate_cannot_links was updated to 68d2cd0be567
• semibin_generate_sequence_features was updated to 0608cf7dc528
• semibin_train was updated to 2344bc30a326

Annotation

• mmseqs2_taxonomy_assignment was updated to 9e47b28bff57

Assembly

• hifiasm was updated to 5d365d5cbe9d

Evolution

• quicktree was updated to 1e89a460d1bd
• quicktree was updated to ab50e1a75a77

FASTA/FASTQ

• ncbi_fcs_gx was updated to 2559b7ce2114

Mapping

• bwa was updated to 1dfc975b48d5
• bwa_mem2 was updated to d459a463cb73

Mothur

• mothur_chimera_ccode was updated to b6e0f8a9bc6b

Multiple Alignments

• mmseqs2_easy_linclust_clustering was updated to e6c5f120f010

NCBI Blast

• ncbi_blast_plus was updated to fc35ffc8c548

Single-cell

• anndata_export was updated to f843b9afd94e
• anndata_import was updated to 923dcc644832
• anndata_inspect was updated to afe044e6bc93
• anndata_manipulate was updated to be1fdce914c6
• modify_loom was updated to c822c5c1feef
• scanpy_cluster_reduce_dimension was updated to a84a73471be7
• scanpy_filter was updated to 5813f9920877
• scanpy_normalize was updated to 4766556db52c
• scanpy_plot was updated to 5a5468c0d26f
• scanpy_remove_confounders was updated to 458d4ab0f894

None

• data_manager_diamond_database_builder was updated to 4a08b7b76b78
• data_manager_mmseqs2_database was updated to 561c4b181bfa