On 2025-06-02, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #516

Ecoregionalization

• claraguess was updated to f11879f7b554
• ecoregion_brt_analysis was updated to 694738eda0dc
• ecoregion_clara_cluster was updated to c1d03f1a2e80
• ecoregion_cluster_estimate was updated to 0578979cfd83
• ecoregion_eco_map was updated to c2856067ee72
• ecoregion_geonearestneighbor was updated to 1d225ca5fac0
• ecoregion_taxa_seeker was updated to 14bad9452425

Get Data

• wormsmeasurements was updated to 6f75ab89587a
• openalex_explorer was updated to 7a27a48d57c0

Metabolomics

• msmetaenhancer was updated to 646ef66527da

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

ChemicalToolBox

• gmx_get_builtin_file was updated to 377fe4ce732d
• gmx_rg was updated to 018628703771

Mapping

• rgrnastar was updated to de21b616f03a
• rna_starsolo was updated to a00cceb45700

Machine Learning

• cleanlab was updated to 462b5bc27acd
• tabpfn was updated to 1d77df05cbfc

Metagenomic Analysis

• sylph_profile was updated to 6c1ac7640090
• sylph_query was updated to d2a4c2cb8779
• kraken2 was updated to 241a78eb2935

None

• data_manager_sylph_database was updated to 130224fe2d18
• data_manager_sylph_tax_database was updated to 7862ca465c6b
• data_manager_diamond_database_builder was updated to 4a08b7b76b78

Single-cell

• vpt_extract was updated to 7d42c9b75718

Astronomy

• astropy_csv2fits was updated to 7f5c597801f0
• astropy_fits2bitmap was updated to 6b6dc2b5e52d
• astropy_fits2csv was updated to de3594e8d718
• astropy_fitsinfo was updated to 806a3fff2769
• crbeam_astro_tool was updated to f40d05521dca
• desi_legacy_survey_astro_tool was updated to ea39f416af9d
• plot_tools_astro_tool was updated to 2b1759ccaa8b

FASTA/FASTQ

• fastq_to_fasta was updated to 02a5f43cd5d1
• umi_tools_dedup was updated to 9cd1c2f5d90e

Mothur

• mothur_chimera_pintail was updated to d06d799b19ae
• mothur_normalize_shared was updated to a89fbfe8386f
• mothur_summary_seqs was updated to 4af62516059b
• mothur_summary_shared was updated to 74c8ebee088c

Phylogenetics

• hyphy_fubar was updated to cd41e7a4d35f

Send Data

• ena_upload was updated to 7ca4ed416391

hca_sc_scanpy_tools

• scanpy_integrate_bbknn was updated to 26805c747e15
• scanpy_parameter_iterator was updated to 328e7846309d

Annotation

• gff_to_prot was updated to 661c164268cc
• transit_gumbel was updated to a6c8b6e47c51
• transit_hmm was updated to d6b029a6de63
• transit_resampling was updated to a05b6a392ff0
• transit_tn5gaps was updated to d516fc63b6e5

Imaging

• gate_finder was updated to e860ca30cd0b
• vitessce_spatial was updated to 97be83fc3677