On 2025-07-14, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #522
Annotation
- abricate was updated to b734db305578
- isescan was updated to 81539b9ae80a
- kofamscan was updated to 23494763e39e
- ectyper was updated to 08d801182fa1
Join, Subtract and Group
- datamash_ops was updated to 61e2aa6bb55d
- datamash_reverse was updated to 9c42f7dabad8
- datamash_transpose was updated to a2667f8d23de
Machine Learning
- sklearn_feature_selection was updated to 5773e98921fc
- sklearn_model_validation was updated to de360b57a5ab
Metabolomics
- matchms_fingerprint_similarity was updated to 99da744050b7
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
ChemicalToolBox
- openbabel_remove_protonation_state was updated to 00263ca6ffb8
- sucos_docking_scoring was updated to 2e67eea82ff7
Get Data
- unipept was updated to 917fd3ebc223
Proteomics
- openms_featurefindermetabo was updated to 00080bb4299e
- openms_idmassaccuracy was updated to 31bc4129f589
Convert Formats
- graphicsmagick_image_convert was updated to 627e8b38f24f
- thermo_raw_file_converter was updated to 77a18a61aeed
- crossmap_bam was updated to 908df9a9f86b
- crossmap_bed was updated to b1c12a94db6f
- crossmap_gff was updated to 0eb744382179
- crossmap_region was updated to 4fba951013e2
- crossmap_vcf was updated to d8649c4e4c3a
- crossmap_wig was updated to 754f70dd85ae
- ucsc_maftoaxt was updated to bb486fb0103d
- ucsc_nettoaxt was updated to d8807bae7b3f
Imaging
- json2yolosegment was updated to 2e6ca212a1af
- yolo_predict was updated to 983ce2a25b48
- yolo_training was updated to ffee3c7c90eb
- tesseract was updated to d39f16771b62
None
- data_manager_deeparg was updated to c5511a9b1442
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
FASTA/FASTQ
- seqtk was updated to 8511b6d85fc7
Mapping
- bwa_mem2 was updated to af91699b8d4c
Metagenomic Analysis
- instrain_profile was updated to 1f3730540302
- vegan_rarefaction was updated to b0d5976540e3
Mothur
- mothur_heatmap_sim was updated to c2dead9d38c4
- mothur_parsimony was updated to fd6cebeaa143
Phylogenetics
- hyphy_slac was updated to 67d3fc9ae1c3
SAM/BAM
- samtool_filter2 was updated to b7aa423007bf
Text Manipulation
- dos2unix was updated to 0b3a28ad3947
Variant Calling
- ensembl_vep was updated to 543f208417cb
hca_sc_scanpy_tools
- scanpy_filter_cells was updated to e05cafd4e2b2
hca_sc_scmap_tools
- scmap_index_cluster was updated to 314f21a351ea
RNA Analysis
- graphprot_predict_profile was updated to 4ad83aed5c3c
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