On 2025-08-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #526
Graph/Display Data
- ggplot2_pca was updated to 1df3b30325dd
Get Data
- xarray_import_data was updated to f1b185fc409a
Metabolomics
- biotransformer was updated to 200c5c982dba
- matchms_add_key was updated to d5a50ec6035d
- matchms_convert was updated to 5611c132f607
- matchms_filtering was updated to 3f7790b73906
- matchms_fingerprint_similarity was updated to 1ffbd537984f
- matchms_formatter was updated to 5fa29e292e12
- matchms_metadata_export was updated to 86727e1d0866
- matchms_metadata_match was updated to 5c379988b7ea
- matchms_metadata_merge was updated to e052eac8be4a
- matchms_networking was updated to c42b977ec884
- matchms_remove_key was updated to ef233c08112e
- matchms_remove_spectra was updated to c7be8e58a6af
- matchms_spectral_similarity was updated to b2c7b7705734
- matchms_split was updated to 7676700d7c4f
- matchms_subsetting was updated to 8f5a1e44b15c
- msmetaenhancer was updated to 560053b805d2
- riassigner was updated to 984d5fa7acf5
- rmassbank was updated to 60c2da112839
- use_theoretical_mz_annotations was updated to c68193aed29e
Proteomics
- cardinal_single_ion_segmentation was updated to 4cb6c83d3777
- bioconductor_scp was updated to 8a6c7302de66
Metagenomic Analysis
- checkm_analyze was updated to 027297969224
- checkm_lineage_set was updated to 3f32eb89d482
- checkm_lineage_wf was updated to c3735bcc9cb8
- checkm_plot was updated to ca5846873a2e
- checkm_qa was updated to 1d9365ace97d
- checkm_taxon_set was updated to 7b705d847810
- checkm_taxonomy_wf was updated to 98731fd340c5
- checkm_tetra was updated to 0061483faf7d
- checkm_tree was updated to d030ce59f075
- checkm_tree_qa was updated to 74767297a247
- semibin was updated to fdb13ee4be38
- semibin_bin was updated to 8317c7dc6407
- semibin_concatenate_fasta was updated to 2c7ed948eeed
- semibin_generate_cannot_links was updated to a490494875c7
- semibin_generate_sequence_features was updated to 8ba0c2edf3f3
- semibin_train was updated to 14046254799c
- checkv_build_database was updated to 3756ac7a625b
- checkv_build_database was updated to 7e80c69020f7
- checkv_build_database was updated to 88042a5ead89
Data Managers
- data_manager_qiime_database_downloader was updated to ed86a8f378c8
- genomad_build_database was updated to 03623fc64d5c
- genomad_build_database was updated to 34b729713d0c
- genomad_build_database was updated to c4ec3d81eeee
- iphop_build_database was updated to 39dc692a9554
- vibrant_build_database was updated to 200343b50d46
- vibrant_build_database was updated to 3f68072f2da6
- virsorter_build_database was updated to 863ba94fb6e4
- virsorter_build_database was updated to ad63dbb3493a
- virsorter_build_database was updated to c456ae8354f2
Statistics
- saqc was updated to 724dcbb35c9a
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Mapping
- bwameth was updated to b7ce99273d62
SAM/BAM
- sambamba_flagstat was updated to cfd6e76541ff
- tasmanian_mismatch was updated to 98f2b5dfdaa9
None
- data_manager_motus was updated to 0370fe3cf518
- data_manager_sylph_tax_database was updated to 7862ca465c6b
- data_manager_picard_index_builder was updated to 7124d2c14e4b
- data_manager_build_kraken2_database was updated to 201eff2131d6
- data_manager_build_staramr was updated to 0b367fda55da
- data_manager_build_staramr was updated to 3658cf4b6fd2
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
- data_manager_fetch_plasmidfinder was updated to 8a3955d56000
- data_manager_funannotate_options was updated to e22da646fed7
- data_manager_groot_database_downloader was updated to 0c255951902a
- data_manager_gtdbtk_database_installer was updated to e7b39a7e0024
- data_manager_kaiju was updated to d89783920192
- data_manager_metaphlan_database_downloader was updated to 2c22b676ec46
- data_manager_metaphlan_database_downloader was updated to 2c61c30a57e7
- data_manager_mmseqs2_database was updated to 35885ec2e59b
- data_manager_mmseqs2_database was updated to 561c4b181bfa
- data_manager_omamer was updated to e1502e4f8725
- data_manager_pangolin_data was updated to c22f6c820658
Astronomy
- grb_detection_astro_tool was updated to c80db1ec6611
Annotation
- funannotate_predict was updated to 4b96ced19f75
- orthofinder_onlygroups was updated to b6ec80429d54
- ppanggolin_all was updated to d2b0073ef8d6
- ppanggolin_msa was updated to e331e475e854
Assembly
- pairtools_dedup was updated to 41faa653d86c
- pairtools_parse was updated to bfb00f8fec97
- pairtools_sort was updated to 880d2519963f
- pairtools_split was updated to 7a125af14644
- pairtools_stats was updated to d08c53f6425b
Evolution
- iqtree was updated to 563c3aa769f2
FASTA/FASTQ
- fastp was updated to 350c736075eb
- fastplong was updated to 23f75f8716cf
- umi_tools_count was updated to 437d5c72f2e3
Other Tools
- pcdl_get_anndata was updated to c78f852b1a45
- pcdl_get_cell_attribute was updated to 4fa8a2d9fe6d
- pcdl_get_cell_attribute_list was updated to 5f20244b80ac
- pcdl_get_cell_df was updated to 8f7513d34212
- pcdl_get_celltype_list was updated to e61e0f7dff32
- pcdl_get_conc_attribute was updated to f7f40cc1cfce
- pcdl_get_conc_df was updated to b995568c667e
- pcdl_get_substrate_list was updated to d769482946e0
- pcdl_get_unit_dict was updated to 24993ec6d174
- pcdl_get_version was updated to 2d2ef2e2d1e3
- pcdl_make_cell_vtk was updated to 8e422141680e
- pcdl_make_conc_vtk was updated to 0f6d33a7b252
- pcdl_make_gif was updated to ae1374bb6ac5
- pcdl_make_graph_gml was updated to 6d0f91e057f3
- pcdl_make_movie was updated to cdf80ce8978e
- pcdl_plot_contour was updated to dc77ad27cd20
- pcdl_plot_scatter was updated to bc08e5879459
- pcdl_plot_timeseries was updated to c8c9631bec71
Single-cell
- scanpy_plot was updated to 8599fd07d140
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