On 2025-10-12, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #534
Quality Control
- multiqc was updated to e4dd4c0622f6
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Assembly
- fbqs_integrator was updated to 545d37b03fc7
Proteomics
- openms_idextractor was updated to d1d410b94443
- constava was updated to 5975e7bd2cde
Metabolomics
- qualitymetrics was updated to 25c9349d1be9
- camera_annotate was updated to 75a1b3f7bacc
- msnbase_readmsdata was updated to 35b6fe4d481c
- xcms_export_samplemetadata was updated to e13c7bc91c63
- xcms_fillpeaks was updated to a8d866a71ba1
- xcms_group was updated to 3820e3f3b1cb
- xcms_merge was updated to ae28a753a6f8
- xcms_plot_chromatogram was updated to 9291271ec4d9
- xcms_retcor was updated to 33c0ca93f3ee
- xcms_summary was updated to 1ae878634ab3
- nmr_preprocessing was updated to 122df1bf0a8c
- intensity_checks was updated to 2e580585782e
- isoplot was updated to 61c959ebdef5
- xcms_refine was updated to 6c2798bce3eb
Collection Operations
- unzip was updated to 28d6129b2901
Annotation
- coreprofiler_allele_calling was updated to 3cbbbf459e8e
- omark was updated to 9607b69326e1
Convert Formats
- bioext_bam2msa was updated to f287fbd75138
- tooldistillator was updated to bbdc53e9b559
- tooldistillator_summarize was updated to bbbcee71e70e
FASTA/FASTQ
- seqkit_split2 was updated to 911de3a36b31
Mapping
- bioext_bealign was updated to d3ece1957fdb
Metagenomic Analysis
- checkm2 was updated to 304ac5b49dea
- gtdbtk_classify_wf was updated to 53a019316350
- seqsero2 was updated to b22d0eb5274c
Phylogenetics
- hyphy_absrel was updated to 8db8d509d51b
- hyphy_annotate was updated to 5b4fd931a989
- hyphy_bgm was updated to ab9d1d5d5e29
- hyphy_busted was updated to 5da8672e89a3
- hyphy_cfel was updated to be3e39ccb02b
- hyphy_conv was updated to b30255d232d2
- hyphy_fade was updated to e05a908455f4
- hyphy_fel was updated to ef2129a50a13
- hyphy_fubar was updated to 6bc07d6011c0
- hyphy_gard was updated to 9127799ac97e
- hyphy_meme was updated to 7852b50fabb7
- hyphy_prime was updated to e0d7277ae941
- hyphy_relax was updated to fba248cbd49e
- hyphy_slac was updated to 1122d1a1ff67
- hyphy_sm19 was updated to 6971ee03a002
- hyphy_strike_ambigs was updated to ea698cd7e086
Send Data
- ena_webin_cli was updated to 93fac0ae859f
Virology
- freyja_aggregate_plot was updated to d0632d8bac6a
- freyja_boot was updated to e78fe0649ed4
- freyja_demix was updated to 945b31d82638
- freyja_variants was updated to 5b9314d73110
- ivar_filtervariants was updated to fcbeda41d0ac
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
- data_manager_gtdbtk_database_installer was updated to 3a3cb74b3f6e
hca_sc_scanpy_tools
- scanpy_parameter_iterator was updated to 1a30a61effea
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