On 2025-11-30, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #541

FASTA/FASTQ

• fastq_filter was updated to ff7d49ec777f
• fastq_groomer was updated to 10d4df6a9d94
• fastq_manipulation was updated to e06d41f3ed3e
• fastq_paired_end_deinterlacer was updated to c48cf4699be7
• fastq_paired_end_interlacer was updated to acb5090e281f
• fastq_paired_end_joiner was updated to 115f6bb3ae79
• fastq_paired_end_splitter was updated to 7fafac615aa1
• fastq_trimmer was updated to fe86fb89562d
• fastqtofasta was updated to 4a3e93647a4e

GIS Data Handling

• aquainfra_ogc_api_processes was updated to 6b0a7e4e1460
• ccds_download_era5_af was updated to 4f3c56dc4c60
• cmems_download_ic_bc was updated to 035bd57dcab4

Computer vision

• wildlife_megadetector_huggingface was updated to ee88182dacd5

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623
• qiime2__feature_table__filter_features was updated to 3847bb58cce7

Imaging

• overlay_images was updated to 66fe62b96281

Annotation

• aragorn_trna was updated to 3293904c967c
• trnascan was updated to 2b4b8d8436ce
• genenotebook_genenotebook_build was updated to 00375db0029a
• ppanggolin_all was updated to 72179c3fa871
• ppanggolin_msa was updated to ff17ecc1c5f9
• ppanggolin_projection was updated to ded401aa8b09
• ppanggolin_rarefaction was updated to e717755c87aa

Get Data

• iedb_api was updated to 8c6526a46319

None

• amrfinderplus_data_manager_build was updated to dfa1eb2941b0
• data_manager_diamond_database_builder was updated to 4a08b7b76b78

RNA Analysis

• edger was updated to fb9b9f0f2f06

Single-cell

• snapatac2_clustering was updated to d258720d9a42
• snapatac2_peaks_and_motif was updated to 02a7162fc510
• snapatac2_plotting was updated to 1ac4a5f05f33
• snapatac2_preprocessing was updated to 20c4011e1458