On 2025-12-07, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #542

Annotation

• coreprofiler_allele_calling was updated to 515124ba871a
• ectyper was updated to 08d801182fa1

Graph/Display Data

• ggplot2_heatmap2 was updated to 6a097d09fca3

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

Variant Calling

• bcftools_annotate was updated to 06eaadeffb7d
• bcftools_call was updated to c277260d3fab
• bcftools_cnv was updated to 61dfbc82ffc8
• bcftools_concat was updated to c3c930926708
• bcftools_consensus was updated to 9a260f6fab93
• bcftools_convert_from_vcf was updated to a20d6492132d
• bcftools_convert_to_vcf was updated to 68736d355615
• bcftools_csq was updated to 9f69e7d58d03
• bcftools_filter was updated to 3502f0e1f0e4
• bcftools_gtcheck was updated to 68d04cd5d35a
• bcftools_isec was updated to 3d21f507fc5d
• bcftools_merge was updated to d3286f971e89
• bcftools_mpileup was updated to 43f0efd586c4
• bcftools_norm was updated to 5fa262ce95dd
• bcftools_plugin_color_chrs was updated to 845a7025ba81
• bcftools_plugin_frameshifts was updated to 3c6952a2b0e4
• bcftools_plugin_setgt was updated to 394dbf428c7b
• bcftools_plugin_split_vep was updated to 66682ee970c6
• bcftools_query was updated to 1dc6f1ac7f32
• bcftools_reheader was updated to a0b1c0bdfa5a
• bcftools_roh was updated to acfd6984d130
• bcftools_stats was updated to fcf941c241cc
• bcftools_view was updated to 2a7d7ee53975

Convert Formats

• graphicsmagick_image_compare was updated to 8fa7b6892af5
• graphicsmagick_image_convert was updated to 54c9a136e24f
• graphicsmagick_image_montage was updated to 77f67ddd89d6

Assembly

• genomescope was updated to 0bace381c9fd

FASTA/FASTQ

• seqkit_fx2tab was updated to 35136ed940a1
• seqkit_head was updated to 934165d1f733
• seqkit_locate was updated to e565ba1ddce4
• seqkit_sort was updated to 9ba18868a990
• seqkit_split2 was updated to 22a535d54360
• seqkit_stats was updated to 24107542edff
• seqkit_translate was updated to c669e8550c46

Multiple Alignments

• trimal was updated to c2008ab22c09

Nanopore

• nanocomp was updated to 0a8f9bce9dd6

Single-cell

• scanpy_cluster_reduce_dimension was updated to 49ce1315722c
• scanpy_filter was updated to 5b3c1679d29b
• scanpy_filter was updated to 92a189c299d4
• scanpy_inspect was updated to 27c054e8d949
• scanpy_normalize was updated to e639abb0de92
• scanpy_plot was updated to 16a1c3122996
• scanpy_remove_confounders was updated to be0d45c46e97

None

• data_manager_diamond_database_builder was updated to 4a08b7b76b78