On 2025-12-14, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #543

Get Data

• nfdi4earth_os4a was updated to 461a451e792a

Metabolomics

• recetox_msfinder was updated to a48a1c23257c

ChemicalToolBox

• qcxms_getres was updated to 720958b09af4
• qcxms_neutral_run was updated to c40784ec1fdd
• qcxms_production_run was updated to 69ba95cdcff2

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

Proteomics

• pvactools was updated to e967ba68bc42

Convert Formats

• markitdown was updated to 4926706c13db
• bbgbigwig was updated to 2d24e59a351a

Imaging

• cellpose was updated to 6b840482cc25
• 2d_simple_filter was updated to 1b7e67168732
• concat_channels was updated to 999c5941a6f0
• ridge_filter was updated to 33e3d7e8283f
• scale_image was updated to e85846f4a05f
• split_image was updated to 390943df8a35

Annotation

• coreprofiler_allele_calling was updated to e4f31d0138a8
• mitos2 was updated to 59c8717f6925

None

• data_manager_build_coreprofiler was updated to 9e6d0309ec06
• data_manager_dada2 was updated to f15270614b1b
• data_manager_diamond_database_builder was updated to 4a08b7b76b78

Metagenomic Analysis

• gtdbtk_classify_wf was updated to 28bc8c01b193
• kegg_pathways_completeness was updated to 9933e2f91584
• kraken2 was updated to cbe396d9773e

NCBI Blast

• diamond was updated to 9553180705b7

Nanopore

• chopper was updated to 3f4f192666f4
• nanocomp was updated to 9b1836ad6c2e
• nanoplot was updated to 9eab750c367d

Single-cell

• modify_loom was updated to 4c9fa3c63d9e