On 2026-02-08, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #551

Species abundance

• pampa_communitymetrics was updated to 5873ac1a5a44
• pampa_presabs was updated to f1bfdeb5ebfe
• stoc_mainglm_group was updated to e3e173ae01b0

Quality Control

• multiqc was updated to c1a4b5f3b432

Metabolomics

• hmdb_ms_search was updated to 453fbe98925a
• matchms_convert was updated to ece330bc4882
• matchms_filtering was updated to 11431418a707
• matchms_fingerprint_similarity was updated to 9f846954928f
• matchms_formatter was updated to 3dad3f53402f
• matchms_metadata_export was updated to 811104b25490
• matchms_metadata_match was updated to 651cf2ca74b2
• matchms_spectral_similarity was updated to 32a8826ed367
• matchms_split was updated to a7162e5281c1
• table_pandas_arithmetics was updated to 19968a1b4068
• table_pandas_transform was updated to eaddbdff9dbf
• table_scipy_interpolate was updated to ac42a5982210

QIIME 2

• qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
• qiime2__deblur__denoise_16S was updated to b883cbea5623

ChemicalToolBox

• autodock_vina_prepare_receptor was updated to 8b9b960c9409
• mdanalysis_angle was updated to 4c93f7541218
• mdanalysis_dihedral was updated to 2fff8653412f
• alphafold2 was updated to 31f648b7555a
• alphafold2 was updated to abba603c6ef3

RNA Analysis

• salmon was updated to 53e9709776a0
• srnapipe was updated to b140b740f828
• seurat_create was updated to a7af4acac32c

Graph/Display Data

• jbrowse2 was updated to 990291e918c7
• jbrowse2 was updated to a074cd6b5905
• jbrowse was updated to 7ed0827da5a8

FASTA/FASTQ

• fasta_compute_length was updated to e12f68d2cc4e
• je_clip was updated to 3c7fa5621091
• je_demultiplex was updated to dacd089d81ae
• je_demultiplex_illu was updated to c1a390032ed5
• trimmomatic was updated to 53af7b5b1b56

Mapping

• rgrnastar was updated to d681e989ac95

Peak Calling

• macs2 was updated to 56e104999978

Epigenetics

• metilene was updated to 37abd09a0ae6
• hifive was updated to cc95aa05f643

Phenotype Association

• gwas_quality_control_plink was updated to 550ac0262219

Annotation

• gecco was updated to a41a2bcb0b91
• gecco was updated to cebc53d02da6
• nucleosome_prediction was updated to 49d81e777389

Variant Calling

• exomedepth was updated to 5d60331757d3
• plink was updated to 18be55ee8e08

Collection Operations

• split_file_to_collection was updated to 0046692724f9

Imaging

• 2d_simple_filter was updated to 6fecb8056a80
• superdsm was updated to 7a415a2ea490

Evolution

• iqtree was updated to c1d53e95327f

HiCExplorer

• hicexplorer_hicaggregatecontacts was updated to 0c812ed34277
• hicexplorer_hicbuildmatrix was updated to 8bf84c4cb1cb
• hicexplorer_hiccomparematrices was updated to 6d2c4187805b
• hicexplorer_hiccorrectmatrix was updated to ccb35fd640b9
• hicexplorer_hiccorrelate was updated to 0942d0a1b0bd
• hicexplorer_hicfindtads was updated to 6bda631b9239
• hicexplorer_hicmergematrixbins was updated to 6bb9545b7c68
• hicexplorer_hicpca was updated to 9110539fa171
• hicexplorer_hicplotdistvscounts was updated to b41ccd496b49
• hicexplorer_hicplotmatrix was updated to 492c1c966a22
• hicexplorer_hicplotviewpoint was updated to 6cca935297f6
• hicexplorer_hicsummatrices was updated to df354ef7bb5f
• hicexplorer_hictransform was updated to 014e59185b0c

Metagenomic Analysis

• cami_amber was updated to d10620e4b88a
• cami_amber_add was updated to 6b4ea6a35102
• cami_amber_convert was updated to f6c9cbbc7d1d
• gtdbtk_classify_wf was updated to fce109bc2aa7

Nanopore

• medaka_variant was updated to 2bf63b38ee9b

Proteomics

• constava was updated to 5c75bd7503fe

None

• data_manager_diamond_database_builder was updated to 4a08b7b76b78
• data_manager_mapseq was updated to a0d77af1d226

hca_sc_scanpy_tools

• anndata_ops was updated to 35ee5e3e87c1
• scanpy_compute_graph was updated to c42c2b540ced