On 2026-03-17, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #565
Filter and Sort
- column_arrange_by_header was updated to dcc6bb900eee
Climate Analysis
- c3s was updated to d7b62d55f8dd
- divand_full_analysis was updated to 462a44dfd3c4
Machine Learning
- keras_batch_models was updated to 679e4ede1191
- keras_model_builder was updated to beeeda757eba
- keras_model_config was updated to 01131463df86
- keras_train_and_eval was updated to aeee74692508
- ml_visualization_ex was updated to 5f9c0e99016f
- model_prediction was updated to 475b5171945f
- sklearn_build_pipeline was updated to 1ed23c988ff6
- sklearn_clf_metrics was updated to e56721f44020
- sklearn_data_preprocess was updated to 0ff864fabfe9
- sklearn_discriminant_classifier was updated to 279cdd8d39e2
- sklearn_ensemble was updated to 0b98933cf0f7
- sklearn_estimator_attributes was updated to e19359b23e54
- sklearn_feature_selection was updated to fcadeadd51ae
- sklearn_fitted_model_eval was updated to f5e6fb49e9ee
- sklearn_generalized_linear was updated to a3495337ab56
- sklearn_label_encoder was updated to 9b067af194b7
- sklearn_lightgbm was updated to 1b7ab45c7858
- sklearn_model_fit was updated to 4cea939d7b31
- sklearn_model_validation was updated to bacc38e0a29e
- sklearn_nn_classifier was updated to 672327583f74
- sklearn_numeric_clustering was updated to 981a0328d6bb
- sklearn_pairwise_metrics was updated to 5bd0866dbc7a
- sklearn_pca was updated to c716b8c86c5d
- sklearn_regression_metrics was updated to 8ced2fac52f4
- sklearn_sample_generator was updated to 86c5b627ddb6
- sklearn_searchcv was updated to 69c44aab684e
- sklearn_svm_classifier was updated to de94341feadb
- sklearn_to_categorical was updated to 6b59e9b96071
- sklearn_train_test_eval was updated to 77125cbb54ac
- sklearn_train_test_split was updated to adc5e53d4297
Statistics
- scipy_sparse was updated to 29200ecec39d
Get Data
- argo_getdata was updated to 6ed1b9c9d4cb
- copernicusmarine was updated to 0c9d6f02ca41
Computer vision
- sam3_semantic_segmentation was updated to 809f339deae2
Metabolomics
- assign_ri_from_comment was updated to e2fa3b23d7db
- msmetaenhancer was updated to 3b402610c6dc
- rcx_tk was updated to 320ebaa133e5
- riassigner was updated to 9b2fe4c49ecb
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Operate on Genomic Intervals
- cluster was updated to 765ceb06c3e2
- complement was updated to e0a23ab32d7f
Phenotype Association
- gwas_quality_control_plink was updated to ec6bfd242bc3
FASTA/FASTQ
- gfastats was updated to 10dc0f5a82e2
- cutadapt was updated to 5d00fd7847eb
Imaging
- json2yolosegment was updated to b4dafa5a9e51
- yolo_predict was updated to 59283a6c4f0a
- yolo_training was updated to bdff5d51a756
- concat_channels was updated to 42f6ed8b1695
Annotation
- mirmachine was updated to 122bb8d553cb
- staramr was updated to f2625d1efadd
Assembly
- rnaquast was updated to 734fbbd94307
Mapping
- pbmm2 was updated to 9fcfd706bf16
Metagenomic Analysis
- checkm_analyze was updated to bb45f97b9579
- checkm_lineage_set was updated to e4fdb6e48445
- checkm_lineage_wf was updated to dcbbec865b86
- checkm_plot was updated to bfbfffa0fd9d
- checkm_qa was updated to 61b0b25c50cb
- checkm_taxon_set was updated to bd631c7b95e3
- checkm_taxonomy_wf was updated to c7dddac32efc
- checkm_tetra was updated to 81af66339b05
- checkm_tree was updated to 5e445adeff70
- checkm_tree_qa was updated to 39010c7012f2
Multiple Alignments
- faffy_chunk was updated to 233f4d173179
- faffy_extract was updated to 30c0d75a8e9c
- faffy_merge was updated to 65a2aa997cdd
- hal_hal2fasta was updated to 85319195d835
- hal_hal2maf was updated to 1748974c4c60
- hal_hal2paf was updated to ce347602361e
- hal_hal2vg was updated to d989142ead55
- hal_haladdtobranch was updated to fb30a33c372a
- hal_halalignedextract was updated to c673d68da17b
- hal_halalignmentdepth was updated to 33029dc6e850
- hal_halbranchmutations was updated to 016d6b7c20f8
- hal_halcoverage was updated to 0f5bcf7e18a7
- hal_halextract was updated to e92632d42ab1
- hal_halindels was updated to 3aa52dad5b61
- hal_halliftover was updated to e47c8b7f8afd
- hal_hallodextract was updated to 039a3ab5c642
- hal_halmaskextract was updated to c0ce8338c920
- hal_halpctid was updated to 3abff47d131b
- hal_halremovegenome was updated to b1c9a12e9c5e
- hal_halremovesubtree was updated to 2d35c5c87668
- hal_halrenamegenomes was updated to cb03a3a5ba3e
- hal_halrenamesequences was updated to f66b4147999f
- hal_halreplacegenome was updated to d8e31679bd42
- hal_halsnps was updated to 50336dc82da7
- hal_halstats was updated to a9eb29f924e1
- hal_halsummarizemutations was updated to cbe600ed01f7
- hal_halsynteny was updated to 382999d193bd
- hal_halupdatebranchlengths was updated to acb100bdf203
- hal_halvalidate was updated to 0228d26fb499
- hal_halwiggleliftover was updated to 9a0c65d6cfe2
- hal_maf2hal was updated to 8af265f90d58
- paffy_add_mismatches was updated to 7f0746458bea
- paffy_chain was updated to 90a5a4fb1e6f
- paffy_dechunk was updated to 5731ac9f13ed
- paffy_dedupe was updated to e32ff3b04170
- paffy_filter was updated to 7b47771717d4
- paffy_invert was updated to 3bc77fc0db09
- paffy_shatter was updated to 0a57dcd33351
- paffy_tile was updated to 03da093291cf
- paffy_to_bed was updated to b9058d7dec02
- paffy_trim was updated to 6d07d9dcf653
- paffy_upconvert was updated to 9b7dfe2434e2
- paffy_view was updated to d814e88d49ae
Phylogenetics
- hyphy_absrel was updated to 3f8261f0a826
- hyphy_annotate was updated to 3629cc0115ac
- hyphy_bgm was updated to 0bdd3998a0d7
- hyphy_busted was updated to 38ac249e5d69
- hyphy_cfel was updated to 34d2e58b8a1f
- hyphy_conv was updated to 4c52eab912ea
- hyphy_fade was updated to 657baa39114a
- hyphy_fel was updated to b156ae1424fe
- hyphy_fubar was updated to 04de395f2a4e
- hyphy_gard was updated to 6b8fd7d6b0ad
- hyphy_meme was updated to 67fe4f52c1e5
- hyphy_prime was updated to 3791d6afec1e
- hyphy_relax was updated to 50551ca179d3
- hyphy_slac was updated to e46726cd0c9e
- hyphy_sm19 was updated to 07774580b606
- hyphy_strike_ambigs was updated to aaf823b11580
SAM/BAM
- samtools_markdup was updated to ef678e1f70a2
Send Data
- ena_upload was updated to e0f333e6eb73
Spatial Omics
- spatialdata_io was updated to 1f6c780a2635
- spatialdata_operation was updated to 2adfc39ffbac
- spatialdata_plot was updated to c5928c28e2f0
Variant Calling
- varscan_somatic was updated to 31a38ce7e8ae
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
- data_manager_semibin was updated to d584aacd7d13
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