On 2026-06-06, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #587
Quality Control
- multiqc was updated to fac2260bc88a
DNA Metabarcoding
- obi_annotate was updated to 4da9a24971bd
- obi_clean was updated to 1beb31209adb
- obi_complement was updated to 55d01781ffea
- obi_convert was updated to a86cb55cba33
- obi_grep was updated to 7e68109625a3
- obi_multiplex was updated to 569eacd3be7b
- obi_pairing was updated to 78598ed1b8a8
- obi_pcr was updated to a72c4cc8a704
- obi_refidx was updated to 61f9122bb420
- obi_tag was updated to fa01b4b07289
- obi_taxonomy was updated to 9eb7ba86e367
- obi_uniq was updated to 3cd66db293f6
Computer Vision
- sam3_semantic_segmentation was updated to 9777101cccbc
Population Genomics
- effective_population_size_ld_method was updated to 2becf5e2f302
- genetic_format_conversion was updated to 51eca2deef4e
- ssrfilter was updated to 67085b00bde1
Metabolomics
- isolib was updated to a0a6127a7a69
- target_screen was updated to 51f06fbad665
- use_theoretical_mz_annotations was updated to ddd192ac60fe
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
RNA Analysis
- featurecounts was updated to 37d067694d40
- tsenat was updated to efbf859ddd70
Proteomics
- maxquant was updated to fce1301d386c
- swissmodel_modelling_api was updated to 42fdfcbc63ea
Machine Learning
- llm_hub was updated to 914dcb4df04c
- image_learner was updated to 1d0a1899645e
- multimodal_learner was updated to 73af7d202e2a
- tabular_learner was updated to 575cb355247c
Other Tools
- 3dtrees_metadata was updated to d3cff3f1ff4e
Annotation
- prokka was updated to c105b66eaab1
- abritamr was updated to ce54031c2235
- drhip was updated to e301c523e83d
Convert Formats
- ucsc_axtchain was updated to ac3a3feb4cf1
Evolution
- quicktree was updated to 8ea036ce2f13
Filter and Sort
- bigwig_outlier_bed was updated to 57467b5debe6
Get Data
- ncbi_datasets was updated to 07f675a7ac2e
Graph/Display Data
- seaborn was updated to c7cb57d16237
- seaborn_pairgrid was updated to 36f4aa9439a8
- upsetplot was updated to fa2e7ae6cad6
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to 65fc9fc648f4
- hicexplorer_chicdifferentialtest was updated to 7157e98ec11a
- hicexplorer_chicexportdata was updated to 0671a38a29d5
- hicexplorer_chicplotviewpoint was updated to 009ea872cdf5
- hicexplorer_chicqualitycontrol was updated to 853c072bbb11
- hicexplorer_chicsignificantinteractions was updated to e9cf8387e386
- hicexplorer_chicviewpoint was updated to 90d52ca89318
- hicexplorer_chicviewpointbackgroundmodel was updated to fdb67db6d500
- hicexplorer_hicadjustmatrix was updated to 733162fae8b0
- hicexplorer_hicaggregatecontacts was updated to 9c004f11ebe4
- hicexplorer_hicaverageregions was updated to 0ec8d77d1833
- hicexplorer_hicbuildmatrix was updated to 453619f40b89
- hicexplorer_hicbuildmatrixmicroc was updated to d50fb8ae7e11
- hicexplorer_hiccomparematrices was updated to 6f078762ff7f
- hicexplorer_hiccompartmentspolarization was updated to 4630448a0d88
- hicexplorer_hicconvertformat was updated to 0d0c6092cc43
- hicexplorer_hiccorrectmatrix was updated to c5ce0cbf73dc
- hicexplorer_hiccorrelate was updated to 5faa9d3839d0
- hicexplorer_hicdetectloops was updated to 18bf75bf5d67
- hicexplorer_hicdifferentialtad was updated to 5b245b3ded3f
- hicexplorer_hicfindrestrictionsites was updated to 430acc59e883
- hicexplorer_hicfindtads was updated to 7b9fa42ca59c
- hicexplorer_hichyperoptdetectloops was updated to 1fa29fabe773
- hicexplorer_hicinfo was updated to 58293f858e2d
- hicexplorer_hicinterintratad was updated to eddb1f249f6c
- hicexplorer_hicmergedomains was updated to ee33791e32dc
- hicexplorer_hicmergeloops was updated to 7f88b2b4662d
- hicexplorer_hicmergematrixbins was updated to 7011782fdbaf
- hicexplorer_hicnormalize was updated to b1815cb2b298
- hicexplorer_hicpca was updated to b03f8b95b08c
- hicexplorer_hicplotaverageregions was updated to 16a8d1688c65
- hicexplorer_hicplotdistvscounts was updated to 9f0578013f9b
- hicexplorer_hicplotmatrix was updated to eb3a1b9a1c3c
- hicexplorer_hicplotsvl was updated to ff9f5d335041
- hicexplorer_hicplotviewpoint was updated to bb9e080ae77b
- hicexplorer_hicquickqc was updated to 0a134c0bdb39
- hicexplorer_hicsummatrices was updated to 86958f9bec1b
- hicexplorer_hictransform was updated to a4b4bb07ed14
- hicexplorer_hicvalidatelocations was updated to 4060d361cf3c
Mapping
- kma was updated to 6fe0fdd63a67
- minimap2 was updated to f5b1e7d2594f
Metagenomic Analysis
- mgnify_pipelines_toolkit_classify_var_regions was updated to f50b54b40d7f
- mgnify_pipelines_toolkit_make_asv_count_table was updated to 06f46257fea7
- mgnify_pipelines_toolkit_mapseq_to_asv_table was updated to d7a50f1dae96
- mgnify_pipelines_toolkit_permute_primers was updated to df3562628eb7
- mgnify_pipelines_toolkit_primer_val_classification was updated to 989443308ec9
- mgnify_pipelines_toolkit_rev_comp_se_primers was updated to 56abee7b6395
Nanopore
- nanoplot was updated to 640e4eeab4e2
Phylogenetics
- blast_parser was updated to f10c4abc0ab3
- gafa was updated to 38b0685e442a
- gstf_preparation was updated to 8cff16cf17a8
- hcluster_sg was updated to e2a69a5aeb7e
- hcluster_sg_parser was updated to 6f9566d5a509
- raxml was updated to dc97e1b45938
Single-cell
- anndata2ri was updated to 3421d2ea2c8a
- raceid_clustering was updated to 14ac9a11465e
- raceid_filtnormconf was updated to 4d69676e6af2
- raceid_inspectclusters was updated to 53d889b0a2c9
- raceid_inspecttrajectory was updated to 9606d2385547
- raceid_trajectory was updated to fe9bf1aa669e
Variant Calling
- artic_guppyplex was updated to e92767bd4412
- artic_minion was updated to c218cc6bf765
- plink was updated to 9c48485bf664
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
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