On 2021-09-26, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #293

Single-cell

• anndata_import was updated to 499059586799
• scanpy_cluster_reduce_dimension was updated to 35bc2eb568ed
• scanpy_cluster_reduce_dimension was updated to aaa5da8e73a9
• scanpy_filter was updated to b409c2486353
• scanpy_inspect was updated to 9d33775ec67d
• scanpy_inspect was updated to c5d3684f7c4c
• scanpy_normalize was updated to 5342ce58cd1e
• scanpy_normalize was updated to ab55fe8030b6
• scanpy_plot was updated to aa0c474463c2
• scanpy_remove_confounders was updated to 80d4e2cac903
• scanpy_remove_confounders was updated to bf2017df9837

RNA Analysis

• infernal was updated to c9e29ac5d099
• chira_collapse was updated to 75342b9ef628
• chira_extract was updated to 6977e9b7143d
• chira_extract was updated to e7ee3aadf1a5
• chira_map was updated to 92dbdc4d2722
• chira_map was updated to 95ddee768b61
• chira_merge was updated to 6492560fe1b4
• chira_quantify was updated to 06ac35533793
• feelnc was updated to 67af24676bd6
• slamdunk was updated to 5a26589d95ad
• stringtie was updated to 258d696dbd7e
• tximport was updated to 2c338211927c

Convert Formats

• gffread was updated to 154d00cbbf2d
• bioext_bam2msa was updated to 0a4ad829d87a
• bioext_bam2msa was updated to a68cb16fa1a0

Genome editing

• amplican was updated to 71adaaace336

Assembly

• hifiasm was updated to 3f7be05a1597
• minia was updated to b2dc51639ad5
• salsa was updated to ab5b7f6b7198

Annotation

• roary was updated to e88a7de55d6e

SAM/BAM

• samtools_mpileup was updated to 8da515fbc1bf

FASTA/FASTQ

• umi_tools_dedup was updated to 4098ab380097
• umi_tools_extract was updated to 27ac32a22ad2
• umi_tools_group was updated to cf25b50eff0a
• umi_tools_whitelist was updated to 345bdf4546fd

Phylogenetics

• nextalign was updated to b3ff7225da03
• nextclade was updated to 1e0234b87809
• usher was updated to 335665e15630

Metagenomic Analysis

• customize_metaphlan_database was updated to 4212f20315e5
• extract_metaphlan_database was updated to c11805a111ea
• merge_metaphlan_tables was updated to cd298ff669fd
• metaphlan was updated to ff8f55893e7d

ChemicalToolBox

• padel was updated to a84bcb007b09

Proteomics

• openms_openpepxl was updated to a2a842b00f9c
• openms_percolatoradapter was updated to 0fc9ae55bcfc
• openms_percolatoradapter was updated to e7881a82b56d
• openms_xfdr was updated to 81402a5e4173
• openms_xfdr was updated to 9a6e3bb0f358
• proteomiqon_labeledproteinquantification was updated to 764e011f1b0e