On 2021-09-26, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #293
Single-cell
- anndata_import was updated to 499059586799
- scanpy_cluster_reduce_dimension was updated to 35bc2eb568ed
- scanpy_cluster_reduce_dimension was updated to aaa5da8e73a9
- scanpy_filter was updated to b409c2486353
- scanpy_inspect was updated to 9d33775ec67d
- scanpy_inspect was updated to c5d3684f7c4c
- scanpy_normalize was updated to 5342ce58cd1e
- scanpy_normalize was updated to ab55fe8030b6
- scanpy_plot was updated to aa0c474463c2
- scanpy_remove_confounders was updated to 80d4e2cac903
- scanpy_remove_confounders was updated to bf2017df9837
RNA Analysis
- infernal was updated to c9e29ac5d099
- chira_collapse was updated to 75342b9ef628
- chira_extract was updated to 6977e9b7143d
- chira_extract was updated to e7ee3aadf1a5
- chira_map was updated to 92dbdc4d2722
- chira_map was updated to 95ddee768b61
- chira_merge was updated to 6492560fe1b4
- chira_quantify was updated to 06ac35533793
- feelnc was updated to 67af24676bd6
- slamdunk was updated to 5a26589d95ad
- stringtie was updated to 258d696dbd7e
- tximport was updated to 2c338211927c
Convert Formats
- gffread was updated to 154d00cbbf2d
- bioext_bam2msa was updated to 0a4ad829d87a
- bioext_bam2msa was updated to a68cb16fa1a0
Genome editing
- amplican was updated to 71adaaace336
Assembly
- hifiasm was updated to 3f7be05a1597
- minia was updated to b2dc51639ad5
- salsa was updated to ab5b7f6b7198
Annotation
- roary was updated to e88a7de55d6e
SAM/BAM
- samtools_mpileup was updated to 8da515fbc1bf
FASTA/FASTQ
- umi_tools_dedup was updated to 4098ab380097
- umi_tools_extract was updated to 27ac32a22ad2
- umi_tools_group was updated to cf25b50eff0a
- umi_tools_whitelist was updated to 345bdf4546fd
Phylogenetics
- nextalign was updated to b3ff7225da03
- nextclade was updated to 1e0234b87809
- usher was updated to 335665e15630
Metagenomic Analysis
- customize_metaphlan_database was updated to 4212f20315e5
- extract_metaphlan_database was updated to c11805a111ea
- merge_metaphlan_tables was updated to cd298ff669fd
- metaphlan was updated to ff8f55893e7d
ChemicalToolBox
- padel was updated to a84bcb007b09
Proteomics
- openms_openpepxl was updated to a2a842b00f9c
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
- proteomiqon_labeledproteinquantification was updated to 764e011f1b0e
Supported by
