On 2023-03-05, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #375
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
ChemicalToolBox
- rxdock_rbcavity was updated to e99f861ba68a
- alphafold2 was updated to d00e15139065
BED
- bedtools was updated to a1a923cd89e8
RNA Analysis
- salmon was updated to 6b0ba6de1424
- salmon was updated to b265be7af3db
- salmonquantmerge was updated to 178ebdfe5a7e
- salmonquantmerge was updated to 43658f594542
- salmonquantmerge was updated to 85b3dc9b6830
- cuffdiff was updated to af3e173cad7f
- cuffdiff was updated to d3ae7d9c2202
- cuffnorm was updated to f5b2ee725d34
- cuffquant was updated to 6dc45faebc1d
- cherri_eval was updated to 5dd6b8c4ee1e
- cherri_train was updated to 2f7daa5d2d82
- chira_collapse was updated to 00187b27f5e5
- chira_extract was updated to 0a3107204741
- chira_extract was updated to 6977e9b7143d
- chira_extract was updated to 8b2c1d1556ac
- chira_map was updated to 92dbdc4d2722
- chira_map was updated to e7a9859e0040
- chira_merge was updated to 5db894671434
- chira_merge was updated to b8cb089a8e59
- chira_merge was updated to bd57d16524fe
- chira_quantify was updated to 1bfa8c091530
- chira_quantify was updated to 7fb3fc24be0e
- chira_quantify was updated to 8e3da3c5b851
- deseq2 was updated to 6f91b8ce6e07
- deseq2 was updated to 71bacea10eee
- deseq2 was updated to 9a616afdbda5
- deseq2 was updated to a416957ee305
- deseq2 was updated to de44f8eff84a
- deseq2 was updated to e5c8afac22a7
- dexseq was updated to 9fd8b69e6e68
- edger was updated to fb9b9f0f2f06
- featurecounts was updated to 6f66ae7c5f7a
- featurecounts was updated to ce44c6f2ba38
- feelnc was updated to 095162ba8e90
- feelnc was updated to 17a77824c8e4
- heinz was updated to 704c401e0afb
- heinz was updated to e41ec5af7472
- idr was updated to d3ebbf39b1c5
- kallisto_pseudo was updated to 2953303df011
- kallisto_quant was updated to 60f888039fb2
- migmap was updated to fbbe507e692b
- qualimap_counts was updated to e020be4f281b
- scpipe was updated to 3ffca09599ca
- scpipe was updated to 5c4bca9dd4a2
- seurat was updated to 321bdd834266
- seurat was updated to 4c139a9415d7
- seurat was updated to 8d8412d35247
- slamdunk was updated to 24657d5edede
- stringtie was updated to 333a6e13b622
- trinity was updated to 26d5493b20b6
- trinity was updated to 3772d9a10f27
- trinity was updated to 5b60313a6ce7
- trinity was updated to d5e8807a407d
- trinity_abundance_estimates_to_matrix was updated to 2e21a7c28b38
- trinity_abundance_estimates_to_matrix was updated to 442e3696c634
- trinity_abundance_estimates_to_matrix was updated to 59fff1388bc2
- trinity_abundance_estimates_to_matrix was updated to 81a4697677e7
- trinity_abundance_estimates_to_matrix was updated to cdde9062b49c
- trinity_align_and_estimate_abundance was updated to 00719b8004c9
- trinity_align_and_estimate_abundance was updated to 6c20d62180af
- trinity_align_and_estimate_abundance was updated to 6d6b72d14170
- trinity_align_and_estimate_abundance was updated to 893655fa55f9
- trinity_contig_exn50_statistic was updated to 03ca5ddc37a9
- trinity_contig_exn50_statistic was updated to 34840e9c79b0
- trinity_contig_exn50_statistic was updated to 62b05e565a45
- trinity_contig_exn50_statistic was updated to b1e9a0355166
- trinity_contig_exn50_statistic was updated to beafdd47f8cf
- trinity_filter_low_expr_transcripts was updated to 1007cdb58d91
- trinity_filter_low_expr_transcripts was updated to 17101429bf0d
- trinity_filter_low_expr_transcripts was updated to 42c5172815f7
- trinity_filter_low_expr_transcripts was updated to a5ec0e79a93a
- trinity_filter_low_expr_transcripts was updated to b10270739c1b
- trinity_run_de_analysis was updated to 3bff7c3cf63c
- trinity_run_de_analysis was updated to ab87da55fe61
- trinity_run_de_analysis was updated to bbbb39ad9a7e
- trinity_run_de_analysis was updated to f3924bd07cba
- trinity_run_de_analysis was updated to fd588e138aa6
- trinity_super_transcripts was updated to 18a069ea4b96
- trinity_super_transcripts was updated to 29472bde8854
- trinity_super_transcripts was updated to 6f480aee5877
- trinity_super_transcripts was updated to 9c545f1c1a4e
- trinity_super_transcripts was updated to b34de8dc0f64
Proteomics
- openms_openpepxl was updated to a2a842b00f9c
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
- proteinortho_grab_proteins was updated to d348c3a151d9
Assembly
- bionano_scaffold was updated to 3371c5bdc17a
- quast was updated to 72472698a2df
Annotation
- bakta was updated to 865ece5ca178
- busco was updated to e824f5d958d0
- mitos was updated to c7553ba39670
- mitos2 was updated to 033755194fe9
- plasmidfinder was updated to 7075b7a5441b
Metagenomic Analysis
- customize_metaphlan_database was updated to 46fc97bb98f9
- extract_metaphlan_database was updated to 5eccd3d336a3
- merge_metaphlan_tables was updated to e073891b2afc
- metaphlan was updated to 2131d7dca455
None
- data_manager_bakta was updated to bb463043c93e
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
Mothur
- mothur_rarefaction_shared was updated to 419266a5e29e
Phylogenetics
- hyphy_absrel was updated to 841557158611
- hyphy_annotate was updated to 91cf1290ba6f
- hyphy_bgm was updated to 35723f87964d
- hyphy_busted was updated to e908c4003bd8
- hyphy_cfel was updated to 6960dd62c983
- hyphy_conv was updated to beeeed9665ea
- hyphy_fade was updated to cf51d3630757
- hyphy_fel was updated to ec783806a5c3
- hyphy_fubar was updated to 1b893cdead55
- hyphy_gard was updated to 5b777002c2de
- hyphy_gard was updated to 83f146502c0f
- hyphy_gard was updated to 8c388fd08c09
- hyphy_gard was updated to b8a7f604708e
- hyphy_gard was updated to bff9a82d630d
- hyphy_meme was updated to 0052303cfa41
- hyphy_meme was updated to 33040ebb30c6
- hyphy_meme was updated to 45a2366d777e
- hyphy_meme was updated to 5d8389d684bf
- hyphy_meme was updated to 5fd8dc04d6af
- hyphy_meme was updated to a114682b2788
- hyphy_meme was updated to d0f087aae1a3
- hyphy_meme was updated to d653a76f16ee
- hyphy_meme was updated to e0763df98352
- hyphy_prime was updated to 6d29207a32c5
- hyphy_prime was updated to 9d83d1ab0330
- hyphy_prime was updated to b044a346c00d
- hyphy_prime was updated to b3b775a4ae1f
- hyphy_prime was updated to d8092fd69175
- hyphy_prime was updated to dc774be95f6c
- hyphy_prime was updated to e2942cd87117
- hyphy_prime was updated to f207757f9ca2
- hyphy_relax was updated to 134d46bd47dd
- hyphy_relax was updated to 3415a580926d
- hyphy_relax was updated to 4e9485eb5e9d
- hyphy_relax was updated to 5eb9d7217640
- hyphy_relax was updated to a4c5dc437558
- hyphy_relax was updated to be29e2137d32
- hyphy_relax was updated to d62d58407443
- hyphy_relax was updated to ed0f10a1db94
- hyphy_slac was updated to 0c6724c345d9
- hyphy_slac was updated to 24742f335426
- hyphy_slac was updated to 2753a5c7597a
- hyphy_slac was updated to 365e33adf3a4
- hyphy_slac was updated to 5f54f026fbe3
- hyphy_slac was updated to 67d3fc9ae1c3
- hyphy_slac was updated to 82c77ba28d70
- hyphy_slac was updated to 8522e7cc4fb4
- hyphy_slac was updated to c010cbc8ff3a
- hyphy_sm19 was updated to 00b4cf477625
- hyphy_sm19 was updated to 23b041c0d7d2
- hyphy_sm19 was updated to 36e40d93e8a3
- hyphy_sm19 was updated to 40e9160dbbbb
- hyphy_sm19 was updated to 50c12e254867
- hyphy_sm19 was updated to 86e10267b4cc
- hyphy_sm19 was updated to 87dd1c1c84d1
- hyphy_sm19 was updated to a809f93e7e6d
- hyphy_sm19 was updated to a96a307afb40
- hyphy_strike_ambigs was updated to 193dcaef2169
- hyphy_strike_ambigs was updated to 31e7f5a25db3
- hyphy_strike_ambigs was updated to 4bf743518e41
- hyphy_strike_ambigs was updated to 4e3212e05a8f
- hyphy_strike_ambigs was updated to 50554f806e16
- hyphy_strike_ambigs was updated to 650bcc9d3f36
- hyphy_strike_ambigs was updated to 79dc560d8ea3
- hyphy_strike_ambigs was updated to 7b214c69e387
- hyphy_summary was updated to 11dd1a96ffe9
- hyphy_summary was updated to 11fc6218365d
- hyphy_summary was updated to 4e7f1a7d18be
- hyphy_summary was updated to 81b23515db14
- hyphy_summary was updated to bd90215b7d15
- nextalign was updated to d1dd7d1b07f6
- nextclade was updated to 07ab9bd68a02
- nextclade was updated to 0c46b95d60c3
- pangolin was updated to 0ec813ad2910
- pangolin was updated to 3a656a4a43ed
- pangolin was updated to 77402759b866
- pangolin was updated to debfccc4d65b
- pangolin was updated to fe3e8506112c
- phyml was updated to 850e213bee26
- raxml was updated to 14eb2acf30e3
- usher was updated to 335665e15630
- usher was updated to 524cb8f7a69a
- usher_matutils was updated to 79e2ee4e6ebb
Picard
- picard was updated to 2a17c789e0a5
- picard was updated to 6f9c0884a3e7
Quality Control
- multiqc was updated to 161f4383df15
RAD-seq
- stacks_assembleperead was updated to 0c741f364d18
- stacks_assembleperead was updated to b08cd32d03ad
- stacks_cstacks was updated to dab92afa0c98
- stacks_denovomap was updated to 2b1dd7ab69f7
- stacks_denovomap was updated to eb1e95f88e96
- stacks_genotypes was updated to 00f4a4e553ae
- stacks_genotypes was updated to 5af94af9ec8f
- stacks_procrad was updated to 57910d476be9
- stacks_procrad was updated to 8fe258d72ff3
- stacks_pstacks was updated to 7ebc7d229deb
- stacks_pstacks was updated to ede5223bc7f1
- stacks_refmap was updated to 4ee074ca88fb
- stacks_refmap was updated to 7c42e6768c41
- stacks_rxstacks was updated to 2360d8cf42f7
- stacks_rxstacks was updated to 9d0ac63dcfcd
- stacks_sstacks was updated to 95e37a28704b
- stacks_sstacks was updated to e38d181d4e72
- stacks_ustacks was updated to b6de94f2edc0
- stacks_ustacks was updated to e5c97f09fe06
SAM/BAM
- bamtools_filter was updated to 4fe8a75334c8
- bamtools_filter was updated to bd735cae4ce6
- samtool_filter2 was updated to a7add3e93cc5
- samtool_filter2 was updated to b7aa423007bf
- samtools_calmd was updated to 3d873744df7e
- samtools_calmd was updated to c147e3a10573
- samtools_calmd was updated to e65c2cd0964c
- samtools_flagstat was updated to 4e404acfafa6
- samtools_idxstats was updated to 04d5581db1f5
- samtools_mpileup was updated to 111f83918fe6
- samtools_mpileup was updated to fa7ad9b89f4a
- samtools_phase was updated to 6166013090c0
- samtools_rmdup was updated to 9129584416e2
- samtools_stats was updated to 47035d167365
- samtools_stats was updated to 793ad847121d
- samtools_stats was updated to e28839a4b932
- ngsutils_bam_filter was updated to 49bf71fbc574
- ngsutils_bam_filter was updated to aecfe10118ed
- qualimap_multi_bamqc was updated to 16beb83e370c
- samtools_markdup was updated to d0a568e1904b
- samtools_merge was updated to 8890e2d4c068
- samtools_view was updated to df20f1fd453f
- tag_pileup_frequency was updated to b7d7ae3963aa
Send Data
- ena_upload was updated to e1b3b37aa69f
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