On 2023-11-12, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #416
Join, Subtract and Group
- datamash_transpose was updated to a513e3fbb4c5
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
Proteomics
- openms_openpepxl was updated to 40cc19c0dbd6
- openms_openpepxl was updated to a2a842b00f9c
- openms_openpepxl was updated to fc36cfd19834
- openms_percolatoradapter was updated to 0fc9ae55bcfc
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- openms_xfdr was updated to 9a6e3bb0f358
Imaging
- cp_cellprofiler4 was updated to f0656d0f2a4d
- 2d_auto_threshold was updated to 3df9f0a4bf34
- 2d_feature_extraction was updated to 0a53256b48c6
- 2d_simple_filter was updated to f70b215d155c
- bfconvert was updated to 85edbb7a436b
- image_info was updated to 236ec78b2e53
- mahotas_features was updated to 0c76d029dbe3
- overlay_images was updated to 22ff7c705a83
- scale_image was updated to d09507d3fb0e
- visceral_evaluatesegmentation was updated to 4d042d197ac3
- idr_download_by_ids was updated to 4b794652dcdc
- spyboat was updated to 117a042eb1b8
Annotation
- repeatmodeler was updated to fbe22cb3c869
- hmmer_alimask was updated to 3734a6ad6363
- hmmer_hmmalign was updated to 9319e9ed248b
- hmmer_hmmbuild was updated to 923db0592cd0
- hmmer_hmmconvert was updated to d20066f6566e
- hmmer_hmmemit was updated to e9d622609fb5
- hmmer_hmmfetch was updated to 1fca13688921
- hmmer_hmmscan was updated to 347a1f935f4c
- hmmer_hmmsearch was updated to 3bb58751f4ee
- hmmer_jackhmmer was updated to 5cbef50c0c63
- hmmer_nhmmer was updated to 2ec5e1ad1da7
- hmmer_nhmmscan was updated to e7d281a290a6
- hmmer_phmmer was updated to 92ff5dcded40
Assembly
- hifiasm was updated to 0ee0c3089254
Collection Operations
- pick_value was updated to bf793b71559a
Metagenomic Analysis
- lotus2 was updated to ceb2cb800298
- drep_compare was updated to ffeabd4e2c1b
- drep_dereplicate was updated to a248ec535518
- metabat2 was updated to eb50e7eca3dc
- metabat2_jgi_summarize_bam_contig_depths was updated to ec045ca00b50
- semibin was updated to 99ff9221182c
- semibin_bin was updated to dbf5571a8140
- semibin_concatenate_fasta was updated to 298542e0e136
- semibin_generate_cannot_links was updated to a6f004bc73bf
- semibin_generate_sequence_features was updated to ff4e487f4f7e
- semibin_train was updated to 8b77643cf479
SAM/BAM
- mosdepth was updated to efd53f6ceb16
Single-cell
- scanpy_cluster_reduce_dimension was updated to edec35114f72
- scanpy_filter was updated to 2d02d9702d3a
- scanpy_inspect was updated to 6bd82ed14acd
- scanpy_normalize was updated to c9cb76cf8d6c
- scanpy_plot was updated to 95777145cb92
- scanpy_remove_confounders was updated to 73ab2ac53d06
- sceasy_convert was updated to d70139524747
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
Metabolomics
- mzmine_batch was updated to 90d60c9da21e
hca_sc_label_analysis_tools
- decoupler_pseudobulk was updated to 4fa5f370599f
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