On 2026-03-29, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #573
Join, Subtract and Group
- datamash_ops was updated to aaafc0ac4dd2
- datamash_reverse was updated to b5cc41ad28b3
- datamash_transpose was updated to a884245d3b3a
Text Manipulation
- jq was updated to 8c505f8f2977
Machine Learning
- keras_batch_models was updated to 1252578525d1
- keras_model_builder was updated to e4af79bffd57
- keras_model_config was updated to 00b2ee48b412
- keras_train_and_eval was updated to 6ecb3d77d46e
- ml_visualization_ex was updated to 21730620a849
- model_prediction was updated to eae46976fbb8
- sklearn_build_pipeline was updated to bc0117538945
- sklearn_clf_metrics was updated to a0061a087409
- sklearn_data_preprocess was updated to f2234165a453
- sklearn_discriminant_classifier was updated to 4ee087eeda62
- sklearn_ensemble was updated to cab63604ca1d
- sklearn_estimator_attributes was updated to 3881482e568e
- sklearn_feature_selection was updated to 9e0e31bd8392
- sklearn_fitted_model_eval was updated to 9a3cb21a3661
- sklearn_generalized_linear was updated to d3fe6fcc6bf4
- sklearn_label_encoder was updated to 1e006ebbcaf5
- sklearn_lightgbm was updated to f04f39a6825d
- sklearn_model_fit was updated to 9084156b2bb5
- sklearn_model_validation was updated to 845dfafac355
- sklearn_nn_classifier was updated to 187226dceb22
- sklearn_numeric_clustering was updated to 86d4c2b66e16
- sklearn_pairwise_metrics was updated to df87a7702f97
- sklearn_regression_metrics was updated to 4e6ada84d334
- sklearn_sample_generator was updated to 04b160a26690
- sklearn_searchcv was updated to 5023535e9f8b
- sklearn_svm_classifier was updated to 61461e52c923
- sklearn_to_categorical was updated to 89f11e2b0673
- sklearn_train_test_eval was updated to b3a4682eabb6
- sklearn_train_test_split was updated to fc0f9ba14aaa
Statistics
- scipy_sparse was updated to 233aab4c1be8
Population Genomics
- population_genomics_split_vcf_by_pop was updated to 6dfe228eb03c
- population_genomics_vcf_filtering was updated to ba40ff83be36
- population_genomics_vcf_keep_remove_individuals was updated to 6bafe9f61117
- population_genomics_vcf_subset was updated to b03ede8e228e
Metabolomics
- waveica was updated to bf28a0fc0db6
Metagenomic Analysis
- genomad_end_to_end was updated to e8c8dfc6a809
QIIME 2
- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
- qiime2__deblur__denoise_16S was updated to b883cbea5623
Imaging
- json2yolosegment was updated to 72985f2dd91c
- yolo_predict was updated to 24dfd7800749
- yolo_training was updated to ca14397c975d
Annotation
- chewbbaca_allelecall was updated to e4ad2cf041fb
- chewbbaca_allelecallevaluator was updated to a1420ba0b457
- chewbbaca_createschema was updated to 6a6c9e46cb8b
- chewbbaca_downloadschema was updated to 9a68fa4842bb
- chewbbaca_extractcgmlst was updated to a3d1181467e4
- chewbbaca_joinprofiles was updated to 46269c0ef8e9
- chewbbaca_nsstats was updated to eb91c1b90a84
- chewbbaca_prepexternalschema was updated to 604c4097461d
- hicap was updated to 9b6fec5c9e43
- mist_call was updated to faff357af604
- mist_dists was updated to 7fe9376e5a36
- mmseqs2_easy_cluster was updated to 59455fdec91a
- mmseqs2_easy_linsearch was updated to 8dc2c623c210
- mmseqs2_easy_rbh was updated to 07f18a82aeea
- mmseqs2_easy_search was updated to 099360265689
- mmseqs2_easy_taxonomy was updated to 7cbb57e5b351
- mmseqs2_taxonomy_assignment was updated to bd5630d401cd
Collection Operations
- collection_element_identifiers was updated to 3e27acfa4830
Evolution
- revoluzer_crex was updated to 15317b79c449
- revoluzer_distmat was updated to 1fb83776b10b
FASTA/FASTQ
- rasusa was updated to cf65e5c28134
Mapping
- minimap2 was updated to 3faf9a2bf58d
Multiple Alignments
- mmseqs2_easy_linclust_clustering was updated to 1bc9b91a91fd
RNA Analysis
- seurat_clustering was updated to 0db84eba4b55
- seurat_create was updated to ac5f8c583cba
- seurat_data was updated to dde965aee073
- seurat_integrate was updated to 7704fb998596
- seurat_plot was updated to c520f64ffd57
- seurat_preprocessing was updated to 156e5b07369a
- seurat_reduce_dimension was updated to c15978515ff0
SAM/BAM
- coverage_report was updated to 8d45cac1ee32
- samtools_view was updated to 5cf9fcc93508
Single-cell
- scanpy_cluster_reduce_dimension was updated to 795751257d82
- scanpy_filter was updated to 2e6029e47eb5
- scanpy_inspect was updated to a8d291df615d
- scanpy_normalize was updated to 2b6498d4c8c6
- scanpy_plot was updated to 7f478b3258ec
- scanpy_remove_confounders was updated to 80fe16f87825
Variant Calling
- bcftools_plugin_dosage was updated to 0c50683a9c94
- bcftools_plugin_tag2tag was updated to 9268b0ad92af
- deepvariant was updated to 0a151b5f95e4
None
- data_manager_diamond_database_builder was updated to 4a08b7b76b78
Assembly
- mira_assembler was updated to 6bf6e2c537c0
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